AT3G07140.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : GPI transamidase component Gpi16 subunit family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
GPI transamidase component Gpi16 subunit family protein; FUNCTIONS IN: GPI-anchor transamidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Gpi16 subunit, GPI transamidase component (InterPro:IPR007245); Has 383 Blast hits to 363 proteins in 146 species: Archae - 0; Bacteria - 0; Metazoa - 164; Fungi - 131; Plants - 68; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:2261278..2263632 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 72170.50 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.86 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.16 | ||||||||||||||||||||||||||||||||
| Length | 644 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASLLRSLIL LLIVQSFLVA IAFGSKEVEE FSEALLLKPL PDRKVLAHFH FENRAPPSNS HGRHHHLFPK AISQLVQKFR VKEMELSFTQ GRWNHEHWGG 101: FDPLSSMNAK PVGVELWAVF DVPQSQVDTS WKNLTHALSG LFCASINFLE SSTSYAAPTW GFGPNSDKLR YGSLPREAVC TENLTPWLKL LPCRDKDGIS 201: ALMNRPSVYR GFYHSQRLHL STVESGQEGL GSGIVLEQTL TVVLQPETTS VESNMQPSWS LSSLFGRQVV GRCVLAKSSN VYLQLEGLLG YESKNVDTEI 301: EAHQLWKNAE FELSLKPERV IRESCSFLFI FDIDKSSDSE PFDLGLTWKR PSKWSCQQAP LHSSRFLMGS GNERGAIAIL LKATESQEKL SGRDLTNGQC 401: TIKANIFQIF PWYIKVYYHT LQIFVDQQQK TDSEVLKKIN VSPSTDKVSS GMMEMMLELP CEVKSVAISI EYDKGFLHID EYPPDANQGF DIPSALISFP 501: DHHASLDFQE ELSNSPLLSS LKEKSLVRSY TEVLLVPLTT PDFSMPYNVI TITCTIFALY FGSLLNVLRR RIGEEERFLK SQAGKKTGGL KQLLSRITAK 601: IRGRPIEAPS SSEAESSVLS SKLILKIILV AGAAAAWQYF STDE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)