AT5G65950.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1683, C-terminal (InterPro:IPR012880), Foie gras liver health family 1 (InterPro:IPR021773); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:26380290..26384960 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 132235.00 Da | ||||||||||||||||||||||||
| IEP (calculated) | 6.21 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.12 | ||||||||||||||||||||||||
| Length | 1190 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MEEYPEELRT PPVSLVALFG YAELHASITK YLHSQQPPIN ALAFPDFSQI SLLLAHDDQI SRTSSFRDPL SVSDSASPIP SRCGGILKRD WLLKHRTKVP 0101: ALVAAFFPSH HIFGDPTQWL QVCSDLDSLK SVIRPKNIKL VVVVVQSSPH EDISDDRLVA LRKRAELDSK YVLFFNSSIV SELTLSLSRL ASAFAELALS 0201: YYREEGRRIK SRIEKRSSNS LDLNVRYCFK VAVYAEFRRD WGEALKFYED AYHSLHEMIG TSTRLPAIQR LVEIKIIAEQ LHFKISTLLL HGGKLIEAVT 0301: WFHQHKTSYE KVVGSTEFIF LHWDWMSRQF LVFAELLETS SATGQSLTSS NQGTAEISLT EFEFYPAYYY QLAAHYLKDK KSALELLLSM SEIAQEIDSS 0401: SASITPSVYV GQFAQLLEKG EAITLHSITD EEYTRYTISE AKRVQDSLQI IAWLKRSYES FTNLKAQRMA ALCAFEVARE YFDLADPNNA KFFFDIAANL 0501: YRQEGWVTLL WEVLGYLREC SRNLDALKDF VEFSLEMVAL PVTSYENSGN LRNKNYGPGG PATISGRESI HQEVFTLVCR EAELLSSTEG SGFKLATDSP 0601: LHLEIDLVSP LRPVLLASVA FHDQMIKPHA LCSFTLSLLS HLPLPVEIDH LEVQFNQSTC NFVIRNSQRP LWASASNTVK SGSQVENAPL LVLVPNNWLR 0701: LTYAIKSEQS GKLECLSVLA KLGPLFTICS RAESPAAMED LPVWKHENRV ESLPTKDPVL AVFGQKATQV DEPEPQVDVS LGASGPALVG EDFAMPIVVT 0801: SKGHAVYSGE LKINLVDVGG GGLFSPREAE PFSLESHHVE ICGIDGAEGN NESESETGSI KKIQQSFGLV SVPYLKEGES WSCKLEIKWH RPKPVMLFVS 0901: LGYLPHGSEA NTQKVHIHKS LQIEGKMPLL ISNRFMLPYR RDHLLLNRIK PAPDSEDVSS LPLNEKSVLV VSAKNCSEIA LKLVSMSIEF DDEQGETSCL 1001: IQQGGGCGDS PSSANLAPGE EFKKVFTVIP TTRTPKLGLG SIHLKWRREG GNITEAYVST KHKLPEVNVE ASPLVMSLDS PPYAILGEPF TYAVRICNQT 1101: QLLQEAKFGL ADAQSFVLSG SHSNTVSVLP KSEHVLSYKL VPLTCGEQQL PKITLTSARY AAEFQPSAVA SSVFVFPSAP QAEKAISTSK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)