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AT2G40980.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31541795 (2020): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:22318864 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:18686298 (2008): plant-type vacuole plant-type vacuole membrane
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein kinase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein kinase superfamily protein; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase-like domain (InterPro:IPR011009); Has 288 Blast hits to 258 proteins in 97 species: Archae - 0; Bacteria - 150; Metazoa - 0; Fungi - 0; Plants - 117; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJDYeggNOG:ENOG41103UFEMBL:AC004261EMBL:CP002685
EnsemblPlants:AT2G40980EnsemblPlants:AT2G40980.1entrez:818698GeneID:818698
GO:GO:0005886GO:GO:0016301Gramene:AT2G40980.1hmmpanther:PTHR35118
hmmpanther:PTHR35118:SF2HOGENOM:HOG000239088InterPro:IPR011009KEGG:ath:AT2G40980
OMA:FSVACLYPhylomeDB:Q9SLM4PIR:T02097PIR:T02121
Proteomes:UP000006548RefSeq:NP_181631.1SUPFAM:SSF56112TAIR:AT2G40980
UniGene:At.42886UniProt:Q9SLM4
Coordinates (TAIR10) chr2:+:17102090..17104443
Molecular Weight (calculated) 69109.30 Da
IEP (calculated) 5.21
GRAVY (calculated) -0.33
Length 617 amino acids
Sequence (TAIR10)
(BLAST)
001: MEGKSPDLES IGSGTTTKRS SVSSGSRSRT RRDFLSRFTD SAHFTEKLED WFASTLENSA SEGPVFDVPF ELVELQKFDY ALEGISFQQL TRMPSPVYAS
101: SSNALEAKAY LAIEDFLHAT VKSLWEAFWS EALFYAVRIL IARSVSRLDF SQSSNCVFIL LVDSQYGGVV KVEGDVNKLD FDLNNVYECA ADWIKKHSKI
201: AVSPVDRIWN KLGNANWGDI GALQVVFATY HSIMQYFGAP RHSIEDLAAD HSSRLHSRRQ ERQLGDTSLS ENGMFRFQQS TMSPEIVEVQ EESTKIEPEP
301: SMKLEVGSVL WLEESNYQKG YQINEILTNG TLPYHIASPV DDAGKSVFLY VGSPPSQLEP AWEDMNLWYQ VQRQTKILSI MKQRGLSSKY LPQLHGSGRI
401: IHPGQCQKPS SGGRCDHPWC GTPILVTTPV GETVADLVNE GRFGPEEAIR CCHDCLSALS SSSSAGIRHG DIRPENVVYV TSGVRHPYFV LIGWGHAVLE
501: DRDRPAMNLH FSSTYALQEG KLCAASDAES LIYMLYFCSG DFPELDSVEG ALQWRETSWS KRLIQQKLGD ISTVLKAFSD YVDSLCGTPY PLDYDIWLRR
601: LKRNLSEDHG KEIESSG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)