AT2G40980.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein kinase superfamily protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein kinase superfamily protein; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase-like domain (InterPro:IPR011009); Has 288 Blast hits to 258 proteins in 97 species: Archae - 0; Bacteria - 150; Metazoa - 0; Fungi - 0; Plants - 117; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:17102090..17104443 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 69109.30 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 5.21 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.33 | ||||||||||||||||||||||||||||
| Length | 617 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEGKSPDLES IGSGTTTKRS SVSSGSRSRT RRDFLSRFTD SAHFTEKLED WFASTLENSA SEGPVFDVPF ELVELQKFDY ALEGISFQQL TRMPSPVYAS 101: SSNALEAKAY LAIEDFLHAT VKSLWEAFWS EALFYAVRIL IARSVSRLDF SQSSNCVFIL LVDSQYGGVV KVEGDVNKLD FDLNNVYECA ADWIKKHSKI 201: AVSPVDRIWN KLGNANWGDI GALQVVFATY HSIMQYFGAP RHSIEDLAAD HSSRLHSRRQ ERQLGDTSLS ENGMFRFQQS TMSPEIVEVQ EESTKIEPEP 301: SMKLEVGSVL WLEESNYQKG YQINEILTNG TLPYHIASPV DDAGKSVFLY VGSPPSQLEP AWEDMNLWYQ VQRQTKILSI MKQRGLSSKY LPQLHGSGRI 401: IHPGQCQKPS SGGRCDHPWC GTPILVTTPV GETVADLVNE GRFGPEEAIR CCHDCLSALS SSSSAGIRHG DIRPENVVYV TSGVRHPYFV LIGWGHAVLE 501: DRDRPAMNLH FSSTYALQEG KLCAASDAES LIYMLYFCSG DFPELDSVEG ALQWRETSWS KRLIQQKLGD ISTVLKAFSD YVDSLCGTPY PLDYDIWLRR 601: LKRNLSEDHG KEIESSG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)