suba logo
AT4G35870.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plasma membrane 0.575
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi trans-Golgi network
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : early-responsive to dehydration stress protein (ERD4)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
early-responsive to dehydration stress protein (ERD4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein targeting to vacuole; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF221 (InterPro:IPR003864); BEST Arabidopsis thaliana protein match is: ERD (early-responsive to dehydration stress) family protein (TAIR:AT3G21620.1); Has 901 Blast hits to 753 proteins in 163 species: Archae - 0; Bacteria - 0; Metazoa - 307; Fungi - 164; Plants - 325; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5594eggNOG:KOG1134EMBL:AL031986EMBL:AL161588
EMBL:AY090251EMBL:AY096495EMBL:CP002687EnsemblPlants:AT4G35870
EnsemblPlants:AT4G35870.1entrez:829741ExpressionAtlas:Q9SZT4GeneID:829741
Genevisible:Q9SZT4GO:GO:0005622GO:GO:0006623GO:GO:0006811
GO:GO:0016021Gramene:AT4G35870.1hmmpanther:PTHR13018hmmpanther:PTHR13018:SF52
HOGENOM:HOG000083526InParanoid:Q9SZT4InterPro:IPR003864InterPro:IPR027815
InterPro:IPR032880KEGG:ath:AT4G35870ncoils:CoilOMA:HFVFVVI
PaxDb:Q9SZT4Pfam:PF02714Pfam:PF13967Pfam:PF14703
Pfam:Q9SZT4PhylomeDB:Q9SZT4PIR:T04697PRIDE:Q9SZT4
PRO:PR:Q9SZT4ProteinModelPortal:Q9SZT4Proteomes:UP000006548RefSeq:NP_195312.1
SMR:Q9SZT4STRING:3702.AT4G35870.1TAIR:AT4G35870TMHMM:TMhelix
UniGene:At.31377UniGene:At.75582UniProt:A0A097NUT0UniProt:Q9SZT4
Coordinates (TAIR10) chr4:+:16990332..16992785
Molecular Weight (calculated) 92590.00 Da
IEP (calculated) 7.37
GRAVY (calculated) 0.22
Length 817 amino acids
Sequence (TAIR10)
(BLAST)
001: MNRNFSPAAM PPISSMTIDN SFSPPPSSGD LPEIPDAWYG NIQYLLNISV IGLLCCVSIF LFVKLRSDHR RMPGPSALFS KLLAVWKATC REIARHCGAD
101: AAQFLLIEGG SFVLLFSIAV LAVSVMLPLN LYAGTALLSD ELSKTMITHI QKGSALLWLH FVFVVIVVVI SHFGIAAIEA RLKFTRFRDG NGNISDPNAN
201: STAVFTIMVQ GLPKNLGSDR VEFEDCFRLK YPGKVYKFIV PMDLCALDDL ATELVRVRDE ITWLVAKMDS RLLPDEYENV GDNGLVFCVC SLWVRVKVLW
301: SQITERFGFT DDEKLRKLQE LRADLESQLA AYKEGRAQGA GVAFVMFKDV YTANKAVQDF RNERSRRTGK FFSVTELRLQ RNQWKVDRAP LATDIYWNHL
401: GLTKVALIVR RVIVNTILLL ILVFFSSPLA LISALVSAGR IFNAEALDSA QYWLTWVQTS GWIGSLIFQF LPNVFIFVSM YIVIPSALSY LSKFERHLTV
501: SGEQRAALLK MVCFFLVNLI ILKALVESSL ESALLKMSRC YLDGEDCKRI EEYMSPSFLS RSCVSALAFL ITSTFLGISF DLLAPIPWIK KKIQKFRKND
601: MLQLVPEQNE EYALENQEPS SNLETPLLPE NMFESPRFGD IEPMSQDLSE YPISRTSPIP KQKFDFAQYY AFNLTIFALT MIYSSFAPLV VPVGAVYFGY
701: RYIVDKYNFL YVYRVRGFPA GNEGKLMDTV LCIMRFCVDL YLVSMLLFFS VKGDSTKLQA IFTLGVLVMY KLLPSDTDRY HPALLRSIQT VDSIIDGPVD
801: YEAYSHPNFD WDTYNNR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)