suba logo
AT5G15710.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plasma membrane 0.439
vacuole 0.285
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Galactose oxidase/kelch repeat superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), F-box associated interaction domain (InterPro:IPR017451), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G30950.1); Has 1386 Blast hits to 1382 proteins in 63 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1386; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:16701eggNOG:ENOG410IH8YeggNOG:ENOG4111KX1EMBL:AK229249
EMBL:AL391144EMBL:BT011243EMBL:BT012539EMBL:CP002688
EnsemblPlants:AT5G15710EnsemblPlants:AT5G15710.1entrez:831425Gene3D:2.130.10.80
GeneID:831425Genevisible:Q9LFV5Gramene:AT5G15710.1hmmpanther:PTHR32133
hmmpanther:PTHR32133:SF103HOGENOM:HOG000005882InParanoid:Q9LFV5InterPro:IPR001810
InterPro:IPR015916iPTMnet:Q9LFV5KEGG:ath:AT5G15710OMA:MPPRYFR
PaxDb:Q9LFV5Pfam:PF00646Pfam:Q9LFV5Pfscan:PS50181
PhylomeDB:Q9LFV5PIR:T51400PRIDE:Q9LFV5PRO:PR:Q9LFV5
PROSITE:PS50181ProteinModelPortal:Q9LFV5Proteomes:UP000006548RefSeq:NP_197075.1
SMART:SM00256STRING:3702.AT5G15710.1SUPFAM:0052715SUPFAM:SSF81383
TAIR:AT5G15710UniGene:At.31763UniProt:Q9LFV5
Coordinates (TAIR10) chr5:+:5122791..5124137
Molecular Weight (calculated) 50732.40 Da
IEP (calculated) 9.13
GRAVY (calculated) -0.16
Length 448 amino acids
Sequence (TAIR10)
(BLAST)
001: MERLGFWGLL MGSVEKSLDS GNSLACSASA KNGDEESSTS SKQVSPLKGS GSRNTSPLGR VGSRNTSPSR QKVVKTKPRG LEEETVASFG KQVVADVQME
101: DGIWAMLPED LLNEILARVP PFMIFRIRSV CKKWNLILQD NSFLKFHSNV SSHGPCLLTF WKNSPQIPQC SVFSLPLKTW YKIPFTFLPP WAFWLVGSSG
201: GLVCFSGLDG LTFRTLVCNP LMQSWRTLPS MHYNQQRQLI MVVDRSDKSF KVIATSDIYG DKSLPTEVYD SKTDKWSLHQ IMPAVNLCSS KMAYCDSRLY
301: LETLSPLGLM MYRLDSGQWE HIPAKFPRSL LDGYLVAGTQ KRLFLVGRIG LYSTLQSMRI WELDHTKVSW VEISRMPPKY FRALLRLSAE RFECFGQDNL
401: ICFTSWNQGK GLLYNVDKKI WSWISGCALQ SCNSQVCFYE PRFDASVL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)