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AT2G40810.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.995
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : homolog of yeast autophagy 18C
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
homolog of yeast autophagy 18C (ATG18C); CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: homolog of yeast autophagy 18 (ATG18) D (TAIR:AT3G56440.1); Has 1429 Blast hits to 1369 proteins in 244 species: Archae - 0; Bacteria - 43; Metazoa - 558; Fungi - 432; Plants - 215; Viruses - 2; Other Eukaryotes - 179 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQZ6eggNOG:KOG2111EMBL:AC002409EMBL:AK117701
EMBL:BT028913EMBL:CP002685EnsemblPlants:AT2G40810EnsemblPlants:AT2G40810.1
EnsemblPlants:AT2G40810.2entrez:818678Gene3D:2.130.10.10GeneID:818678
Genevisible:Q8GYD7GO:GO:0000045GO:GO:0000422GO:GO:0005774
GO:GO:0005829GO:GO:0006497GO:GO:0015031GO:GO:0019898
GO:GO:0032266GO:GO:0034045GO:GO:0034497GO:GO:0044804
GO:GO:0080025Gramene:AT2G40810.1Gramene:AT2G40810.2hmmpanther:PTHR11227
hmmpanther:PTHR11227:SF25HOGENOM:HOG000217543InParanoid:Q8GYD7InterPro:IPR001680
InterPro:IPR015943InterPro:IPR017986KEGG:ath:AT2G40810OMA:CISEFAF
PaxDb:Q8GYD7Pfam:PF00400Pfam:Q8GYD7PhylomeDB:Q8GYD7
PIR:T00745PRIDE:Q8GYD7PRO:PR:Q8GYD7ProteinModelPortal:Q8GYD7
Proteomes:UP000006548RefSeq:NP_181613.2RefSeq:NP_973650.1SMART:SM00320
SMR:Q8GYD7STRING:3702.AT2G40810.1SUPFAM:SSF50978TAIR:AT2G40810
tair10-symbols:ATATG18Ctair10-symbols:ATG18CUniGene:At.27705UniGene:At.42909
UniProt:Q8GYD7
Coordinates (TAIR10) chr2:+:17032686..17034338
Molecular Weight (calculated) 43834.40 Da
IEP (calculated) 7.07
GRAVY (calculated) -0.13
Length 393 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSTVSNPQG ILQPGSFLLP ESESMKKEEA ELVSVCWNQD SSCFAAGTSH GFRIYNCEPF KETFRRELKD GGFKIVEMLF RSNILALVGG GPNSQYPSSK
101: VLIWDDHQSR CISEFAFRSE IRAVKLRRDR IVVVLEHKIY VYNFMDLRLL HQIETQANPR GLCCLSHHSN TSVLACPGLN RGEIRVEHFG LNMVQIINAH
201: DSSIACMTLT LDGLLLATAS TKGTLIRIFN TMDGTRLQEV RRGVDRADIY SIALSPNVQW LAVSSDKGTV HIFSLRVRVV GEDSYSTENG ALLTQQNYSN
301: SLQGLVSPTI GTNPGSSLSF MRGVLPKYFS SEWSYAQFHV SEVTQFFAAF GSNNTVAIIG MDGSFYRCSF DPVNGGEMGQ LEYIHFMKMD NRP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)