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AT3G56440.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.896
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : homolog of yeast autophagy 18 (ATG18) D
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
homolog of yeast autophagy 18 (ATG18) D (ATG18D); CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: homolog of yeast autophagy 18C (TAIR:AT2G40810.2); Has 1451 Blast hits to 1383 proteins in 243 species: Archae - 0; Bacteria - 34; Metazoa - 579; Fungi - 434; Plants - 212; Viruses - 2; Other Eukaryotes - 190 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQZ6eggNOG:KOG2111EMBL:AK229064EMBL:AL163972
EMBL:CP002686EnsemblPlants:AT3G56440EnsemblPlants:AT3G56440.1entrez:824811
Gene3D:2.130.10.10GeneID:824811Genevisible:Q0WPK3GO:GO:0000045
GO:GO:0000422GO:GO:0005774GO:GO:0005829GO:GO:0006497
GO:GO:0015031GO:GO:0019898GO:GO:0032266GO:GO:0034045
GO:GO:0034497GO:GO:0044804GO:GO:0080025Gramene:AT3G56440.1
hmmpanther:PTHR11227hmmpanther:PTHR11227:SF25HOGENOM:HOG000217543InParanoid:Q0WPK3
InterPro:IPR001680InterPro:IPR015943InterPro:IPR017986KEGG:ath:AT3G56440
OMA:RCIGEFSPaxDb:Q0WPK3Pfam:PF00400Pfam:Q0WPK3
PhylomeDB:Q0WPK3PIR:T49045PRIDE:Q0WPK3PRO:PR:Q0WPK3
ProteinModelPortal:Q0WPK3Proteomes:UP000006548RefSeq:NP_191203.2SMART:SM00320
SMR:Q0WPK3STRING:3702.AT3G56440.1SUPFAM:SSF50978TAIR:AT3G56440
tair10-symbols:ATATG18Dtair10-symbols:ATG18DUniGene:At.22742UniProt:Q0WPK3
Coordinates (TAIR10) chr3:+:20926874..20928797
Molecular Weight (calculated) 43890.10 Da
IEP (calculated) 6.98
GRAVY (calculated) -0.23
Length 391 amino acids
Sequence (TAIR10)
(BLAST)
001: MDPRRNFQPG GYDSRNTFTS GSFGPPDFGE SDEAELVSVS WNQDYSCFAA GTSHGFRIYN CEPFKETFRR ELKDGGFKIV EMLFRSNILA LVGGGPNSQY
101: PSNKVLIWDD HQGRCISEFT FRSEIRAVKL RRDRIVVVLE HKIYVYNFMD LRLLHQIENM ANPRGLCCLS HHMNTSVLAC PGIRRGEVRV EHFGLNMVQI
201: INAHDSNIAC MTLTLDGLLL ATASTKGTLI RIFNTMDGTR LQEVRRGVDR ADIYSIALSP NVQWLAVSSD KGTVHIFSLR VRVIGEDAYS TEHETSSNSL
301: QPLVSPASGA NPGSSLSFLR GVLPKYFSSE WSFSQFHVPE VTQYFAAFGA QNTIAIIGLD GSFYRCNFDP VNGGEMTQLE HFHFLKQDSP R
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)