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AT3G13050.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 0.692
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Major facilitator superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Major facilitator superfamily protein; FUNCTIONS IN: carbohydrate transmembrane transporter activity, transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: organic cation/carnitine transporter4 (TAIR:AT3G20660.1); Has 38439 Blast hits to 37687 proteins in 2363 species: Archae - 738; Bacteria - 22281; Metazoa - 5017; Fungi - 6515; Plants - 2234; Viruses - 0; Other Eukaryotes - 1654 (source: NCBI BLink).
Protein Annotations
BioGrid:5825eggNOG:ENOG410ZVDQeggNOG:KOG0253EMBL:AB026645
EMBL:AY054262EMBL:BT004522EMBL:CP002686EnsemblPlants:AT3G13050
EnsemblPlants:AT3G13050.1entrez:820491GeneID:820491Genevisible:Q940M4
GO:GO:0005524GO:GO:0005886GO:GO:0016021GO:GO:0022891
GO:GO:0090416GO:GO:0090417GO:GO:2001142GO:GO:2001143
Gramene:AT3G13050.1hmmpanther:PTHR24064hmmpanther:PTHR24064:SF287HOGENOM:HOG000114543
InParanoid:Q940M4InterPro:IPR005828InterPro:IPR005829InterPro:IPR020846
KEGG:ath:AT3G13050OMA:AMCCLPIPaxDb:Q940M4Pfam:PF00083
Pfam:Q940M4Pfscan:PS50850PhylomeDB:Q940M4PRIDE:Q940M4
PRO:PR:Q940M4PROSITE:PS00216PROSITE:PS50850ProteinModelPortal:Q940M4
Proteomes:UP000006548RefSeq:NP_187911.1scanprosite:PS00216SMR:Q940M4
STRING:3702.AT3G13050.1SUPFAM:SSF103473TAIR:AT3G13050TMHMM:TMhelix
UniGene:At.26387UniProt:Q940M4
Coordinates (TAIR10) chr3:+:4176866..4178868
Molecular Weight (calculated) 54576.30 Da
IEP (calculated) 8.13
GRAVY (calculated) 0.56
Length 500 amino acids
Sequence (TAIR10)
(BLAST)
001: MADGNTRFTV DEALVAMGFG KFQIYVLAYA GMGWVAEAME MMLLSFVGPA VQSLWNLSAR QESLITSVVF AGMLIGAYSW GIVSDKHGRR KGFIITAVVT
101: FVAGFLSAFS PNYMWLIILR CLVGLGLGGG PVLASWYLEF IPAPSRGTWM VVFSAFWTVG TIFEASLAWL VMPRLGWRWL LAFSSVPSSL LLLFYRWTSE
201: SPRYLILQGR KAEALAILEK IARMNKTQLP PGVLSSELET ELEENKNIPT ENTHLLKAGE SGEAVAVSKI VLKADKEPGF SLLALLSPTL MKRTLLLWVV
301: FFGNAFAYYG VVLLTTELNN SHNRCYPTEK QLRNSNDVNY RDVFIASFAE FPGLLISAAM VDRLGRKASM ASMLFTCCIF LLPLLSHQSP FITTVLLFGG
401: RICISAAFTV VYIYAPEIYP TAVRTTGVGV GSSVGRIGGI LCPLVAVGLV HGCHQTIAVL LFEVVILVSG ICVCLFPFET SGRDLTDSIS ASKEPPSASV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)