AT5G01960.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.916 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RING/U-box superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G65040.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:370811..372775 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 47793.60 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.01 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.00 | ||||||||||||||||||||||||||||||||||||||||
| Length | 426 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: METPGASHDS FRGSPRRNSI LSASNIIQAP ISTLLEYSGL FRARPSPSHE AETLVSDDSS GLSNGEVAIR IIGNTEQDAE TDTNALREPG HSELLGSSAT 101: QVDPMGGASE GASQAAPGDP AAGDAASRDS PYQRYDIQQA ARWIEQILPF SLLLLVVFIR QHLQGFFVAI WIAAVMFKSN DILKKQTALK GERHISALIG 201: ISVAFTAHVV GVYWWFRKDD LLYPLIMLPP KSIPPFWHAI FIIVVNDTLV RQASMIFKCF LLMYYKNSRG RNYRKQGQLL TLVEYFMLLY RSLLPTPVWY 301: RFFLNKDYGS LFSSLMTGLY LTFKLTSVVE KVQSFFTALK ALSRKEVHYG SYATTEQVNA AGDLCAICQE KMHTPILLRC KHMFCEDCVS EWFERERTCP 401: LCRALVKPAD LKSFGDGSTS LFFQIF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)