AT1G05940.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : cationic amino acid transporter 9 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
cationic amino acid transporter 9 (CAT9); FUNCTIONS IN: cationic amino acid transmembrane transporter activity; INVOLVED IN: amino acid transport, transport, transmembrane transport; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cationic amino acid transporter (InterPro:IPR015606), Amino acid/polyamine transporter I (InterPro:IPR002293), Amino acid permease domain (InterPro:IPR004841); BEST Arabidopsis thaliana protein match is: cationic amino acid transporter 4 (TAIR:AT3G03720.1); Has 34191 Blast hits to 33870 proteins in 2358 species: Archae - 527; Bacteria - 27519; Metazoa - 1917; Fungi - 2586; Plants - 410; Viruses - 0; Other Eukaryotes - 1232 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:1801365..1803942 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 60179.70 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.67 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.75 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 569 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGGHEGFSNQ RLSSATWFSH FRASALRSKS LPPPSSQTAV RSTSGDSLVR RLGLFDLILL GVGASIGAGV FVVTGTVARD AGPGVTISFL LAGASCVLNA 101: LCYAELSSRF PAVVGGAYMY SYSAFNEITA FLVFVQLMLD YHIGAASISR SLASYAVALL ELFPALKGSI PLWMGSGKEL LGGLLSLNIL APILLALLTL 201: VLCQGVRESS AVNSVMTATK VVIVLVVICA GAFEIDVANW SPFAPNGFKA VLTGATVVFF SYVGFDAVAN SAEESKNPQR DLPIGIMGSL LVCISLYIGV 301: CLVLTGMVPF SLLSEDAPLA EAFSSKGMKF VSILISIGAV AGLTTTLLVG LYVQSRLYLG LGRDGLLPSI FSRIHPTLHT PLHSQIWCGI VAGVLAGIFN 401: VHSLSHILSV GTLTGYSVVA ACVVALRLND KKDRESSNRW TSSWQEGVIC LVIIACSGFG AGVFYRFSAS VIFILLSVGV AVVASAVLHY RQAYALPLGS 501: GFSCPGVPIV PSVCIFFNIF LFAQLHYEAW IRFVVVSVLA TAVYALYGQY HADPSMLDYQ RAPETESDA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)