AT3G06170.1::SUBA5

AT3G06170.1

Subcellular Consensus
(Prediction and Experimental)

min:

:max

SUBAcon:
vacuole 1.000
What is SUBAcon?

Predictors

External Curations

no data

Experimental Localisations and PPI

FP	MS/MS	PPI
	PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane PMID:18686298 (2008): plant-type vacuole plant-type vacuole membrane	PMID:24833385 (2014): AT1G31812.1:None: PMID:24833385 (2014): AT1G14360.1:None: PMID:24833385 (2014): AT5G06320.1:None: PMID:24833385 (2014): AT4G23400.1:None: PMID:24833385 (2014): AT4G37680.1:None: PMID:24833385 (2014): AT1G11940.1:None: PMID:24833385 (2014): AT3G12180.1:None: PMID:24833385 (2014): AT5G25940.1:None: PMID:24833385 (2014): AT4G30500.1:None: PMID:24833385 (2014): AT5G49540.1:None: PMID:24833385 (2014): AT2G41820.1:None: PMID:24833385 (2014): AT4G25360.1:None: PMID:24833385 (2014): AT1G59730.1:None: PMID:24833385 (2014): AT5G03345.1:None: PMID:24833385 (2014): AT1G07860.1:None: PMID:24833385 (2014): AT3G13175.1:None:

SUBAcon links
AGI-AGI relationships

Coexpression

PPI

AT1G11910.1 vacuole [8.56]
AT2G20740.1 endoplasmic reticulum [8.24]
AT3G08650.1 plasma membrane [8.18]
AT1G16180.1 endoplasmic reticulum [8.08]
AT2G20230.1 plasma membrane [8.06]
AT5G64500.1 vacuole [6.66]
AT1G05940.1 vacuole [6.62]
AT4G32940.1 vacuole [6.5]
AT4G13530.1 nucleus [6.46]
AT2G35680.1 cytosol [6.38]

AT1G31812.1 cytosol
AT1G07860.1 endoplasmic reticulum
AT1G14360.1 endoplasmic reticulum
AT3G12180.1 endoplasmic reticulum
AT3G13175.1 endoplasmic reticulum
AT4G25360.1 endoplasmic reticulum
AT5G03345.1 endoplasmic reticulum
AT1G11940.1 golgi
AT1G59730.1 golgi
AT4G37680.1 golgi
AT4G30500.1 endoplasmic reticulum, golgi
AT5G25940.1 mitochondrion
AT2G41820.1 plasma membrane
AT4G23400.1 plasma membrane
AT5G06320.1 plasma membrane
AT5G49540.1 vacuole

Description (TAIR10)

protein_coding : Serinc-domain containing serine and sphingolipid biosynthesis protein

Curator
Summary (TAIR10)

Computational
Description (TAIR10)

Serinc-domain containing serine and sphingolipid biosynthesis protein; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TMS membrane protein/tumour differentially expressed protein (InterPro:IPR005016); BEST Arabidopsis thaliana protein match is: Serinc-domain containing serine and sphingolipid biosynthesis protein (TAIR:AT1G16180.2); Has 780 Blast hits to 771 proteins in 184 species: Archae - 0; Bacteria - 2; Metazoa - 443; Fungi - 127; Plants - 140; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).

Protein Annotations

eggNOG:ENOG410XP7K	eggNOG:KOG2592	EMBL:BT023726	EMBL:CP002686
EnsemblPlants:AT3G06170	EnsemblPlants:AT3G06170.1	entrez:819791	GeneID:819791
GO:GO:0016021	Gramene:AT3G06170.1	hmmpanther:PTHR10383	hmmpanther:PTHR10383:SF24
HOGENOM:HOG000165463	InterPro:IPR005016	KEGG:ath:AT3G06170	OMA:HDYVCNG
PANTHER:PTHR10383	Pfam:PF03348	PhylomeDB:Q494Q0	Proteomes:UP000006548
RefSeq:NP_187268.2	STRING:3702.AT3G06170.1	TAIR:AT3G06170	TMHMM:TMhelix
UniGene:At.47823	UniProt:Q494Q0

Coordinates (TAIR10)

chr3:+:1867520..1869738

Molecular Weight (calculated)

44879.70 Da

IEP (calculated)

7.01

GRAVY (calculated)

0.58

Length

409 amino acids

Sequence (TAIR10)
(BLAST)

001: MACCLASCCA SATCGLCSSV ASGISRKSAR IAYCGLFGAS LVVSWILRET GAPLLEKLPW INTSDSYTKE WYQQQAVLRV SFGNFLFFAI YALIMIGVKD
101: QNDRRDSWHH GGWGLKMIVW FLLVVLMFFV PNVIVSLYGT LSKFGAGAFL LVQVVLLLDA THNWNDSWVE KDEKKWYIAL LVISIVCYIA TYTFSGILFI
201: WFNPSGQDCG LNVFFIVMPM ILAFVFAIIA LHPAVNGSLL PASVISVYCA YVCYTGLSSE PHDYVCNGLN KSKAVNASTL ILGMLTTVLS VLYSALRAGS
301: STTFLSPPSS PRSGVKDALL GDPEDGKKSG EAEARPVSYS YSFFHIIFAL ASMYAAMLLS GWTDSSESAT LIDVGWTSVW VKICTGWVTA GLYIWTLIAP
401: LILPDREFY