suba logo
AT1G11940.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
golgi 0.845
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein; CONTAINS InterPro DOMAIN/s: Core-2/I-Branching enzyme (InterPro:IPR021141); BEST Arabidopsis thaliana protein match is: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (TAIR:AT1G62305.1); Has 575 Blast hits to 575 proteins in 19 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 548; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410II3BeggNOG:ENOG410ZJRXEMBL:AK117631EMBL:BT005068
EMBL:CP002684EMBL:KJ139012EnsemblPlants:AT1G11940EnsemblPlants:AT1G11940.1
entrez:837746GeneID:837746GO:GO:0005794GO:GO:0008375
GO:GO:0016021GO:GO:0016757Gramene:AT1G11940.1hmmpanther:PTHR31042
hmmpanther:PTHR31042:SF2HOGENOM:HOG000237469InterPro:IPR003406KEGG:ath:AT1G11940
OMA:HANFSIYPfam:PF02485PhylomeDB:Q8GYH0Proteomes:UP000006548
RefSeq:NP_172658.2STRING:3702.AT1G11940.1TAIR:AT1G11940TMHMM:TMhelix
UniGene:At.42103UniProt:Q8GYH0
Coordinates (TAIR10) chr1:-:4031768..4033946
Molecular Weight (calculated) 44418.50 Da
IEP (calculated) 9.45
GRAVY (calculated) -0.26
Length 383 amino acids
Sequence (TAIR10)
(BLAST)
001: MTKKSQPQIP PPLSRRGGVV WLGWKLVIAF SVALCLLALL RIQLQYNSFT TLSFPLSVAR SQTPLHKYSG DRPKLAFLFL ARRDLPLDFM WDRFFKGVDH
101: ANFSIYIHSV PGFVFNEETT RSQYFYNRQL NNSIKVVWGE SSMIEAERLL LASALEDHSN QRFVLLSDRC APLYDFGYIY KYLISSPRSF VDSFLHTKET
201: RYSVKMSPVI PEEKWRKGSQ WIALIRSHAE VIVNDGIVFP VFKEFCKRCP PLGTNEAWLF LKQKRRNCIP DEHYVQTLLT MQGLESEMER RTVTYTVWNV
301: SGTKYEAKSW HPVTFTLENS GPEEIKEIKK IDHVYYESES RTEWCKADSK PVPCFLFARK FTNEAAMRIV SEGLIGSSAN KTL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)