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AT1G53770.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 0.864
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:17151019 (2007): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : O-fucosyltransferase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
O-fucosyltransferase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: GDP-fucose protein O-fucosyltransferase (InterPro:IPR019378); BEST Arabidopsis thaliana protein match is: O-fucosyltransferase family protein (TAIR:AT1G17270.1); Has 69 Blast hits to 67 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 15; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
CAZy:GT68EMBL:BT022031EMBL:CP002684EMBL:KJ138963
EnsemblPlants:AT1G53770EnsemblPlants:AT1G53770.1entrez:841814ExpressionAtlas:Q501D6
GeneID:841814GO:GO:0016021GO:GO:0016757Gramene:AT1G53770.1
hmmpanther:PTHR13398InterPro:IPR019378KEGG:00514+2.4.1.221Pfam:PF10250
PhylomeDB:Q501D6Proteomes:UP000006548RefSeq:NP_175780.1TAIR:AT1G53770
TMHMM:TMhelixUniGene:At.37338unipathway:UPA00378UniProt:Q501D6
Coordinates (TAIR10) chr1:-:20071460..20073708
Molecular Weight (calculated) 63946.30 Da
IEP (calculated) 7.86
GRAVY (calculated) -0.29
Length 563 amino acids
Sequence (TAIR10)
(BLAST)
001: MVKVSSSTTS SSSSSSPDEE SDLQNLLEES DSQIDQFRIS DEAAEQRPTF DVESLRSRLR RSFKLNLTKK QSIFIFLPIV IILIYLSTDF SNYFSVKVPN
101: SAFRSNTLTG RVHESDLQAL YLLRKQESDL FSIWNHTVSN LSTIDDVKSA VFRQISLNRQ IQNALLSPHK TGNVDIGGSS DGYFAGGSCR KVDQKLNGRK
201: TIQWKPRPDK FLFAICLSGQ MSNHLICLEK HMFFAALLKR VLVIPSHRFD YHYSRIIDID RINTCLGRTV VVSFEEFWKK DKNRKKHHHV HINRFICYFS
301: KPEPCYVDKE HITKLKALGI TVGGKLDTPW EEDIARPSNK TAEEVEANFR SDDDVIAIGD VFYANVEREW VMQPGGPVAH KCRTLIEPNR LILLTAQRFI
401: QTFLGKNYIA LHFRRHGFLK FCNAKNPSCF FPIPQAASCI TRLIEKVEAP VLYLSTDAAE SETGLLQSLL ILNGKTVPLV KRPARDSAEK WDALLYRHGL
501: EGDSQVEAML DKTICALSSV FIGASGSTFT EDILRLRKDW GTASECDEYL CANEQPNFIA DHE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)