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AT3G18350.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
peroxisome 0.656
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Plant protein of unknown function (DUF639)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Plant protein of unknown function (DUF639); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF639 (InterPro:IPR006927); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF639) (TAIR:AT1G48840.1); Has 149 Blast hits to 146 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 149; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKQZeggNOG:ENOG410XRI5EMBL:AB026658EMBL:AY056262
EMBL:AY096361EMBL:CP002686EnsemblPlants:AT3G18350EnsemblPlants:AT3G18350.1
entrez:821364GeneID:821364GO:GO:0016021Gramene:AT3G18350.1
hmmpanther:PTHR31860hmmpanther:PTHR31860:SF6HOGENOM:HOG000239747InterPro:IPR006927
KEGG:ath:AT3G18350ncoils:CoilOMA:FMFLTRLPfam:PF04842
PhylomeDB:Q9LS55Proteomes:UP000006548RefSeq:NP_566606.1TAIR:AT3G18350
TMHMM:TMhelixUniGene:At.26343UniProt:Q9LS55
Coordinates (TAIR10) chr3:+:6297524..6300500
Molecular Weight (calculated) 78226.40 Da
IEP (calculated) 9.25
GRAVY (calculated) -0.01
Length 692 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSKTRNMLE GLVRDTSFKW LLGKQSSFDE EIEEMGRSPS AGTNWIPELS PIANVVVRRC SKILGVSANE LRDSFKQEAF ESLKQPSLFP RNFLEYCCFR
101: ALSLSVGVTG HLADKKFRRL TFDMMVVWEV PAVASQALLS VEEDATVSLE AFSRIAPAVP IIADVIICDN LFQMLTSSTG GRLQFSVYDK YLHGLERAIK
201: KMRTQSESSL LSGVRSKREK ILEIDGTVTT QPVLEHVGIS TWPGRLILTD HSLYFEALKV VSYDTPKRYH LSEDLKQIIK PELTGPWGTR LFDKAVSYQS
301: ISLSEPVVME FPELKGHTRR DYWLTIIQEV LYVHRYINKY KITGLARDEA LSKAVLGVMR VQALQELNLT NAMRYENLLP FNLCDQLPGG DLILETLAEM
401: STSRELHRSN KSKDTGTLHS SASDMVSQLG SVFGGSSPRS RRETSSLVVG EVVVGDVNPL ERAVKESRKK YEKVVLAQET INGVKMGGID TNLAVMKELM
501: LPIMETWNLI LSVVYWDDPT KSSVFCLLTT FIIWRGWLVY VFALASLFSA IFMVLTRCFS REKLMIELKV TAPPPMNTME QLLAVQNGIS ELEQNIQDAN
601: IVLLKFRALL FSLFPQASQK FAIAIVVAAT MMAFVPGRYL LSVVFVELFT RYSPPRRAST ERLIRRLREW WFSIPAAPVV LLHDKNNKKK KN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)