AT4G30790.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
INVOLVED IN: autophagy; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Autophagy-related protein 17 (InterPro:IPR007240), Autophagy-related protein 11 (InterPro:IPR019460); Has 8793 Blast hits to 6268 proteins in 570 species: Archae - 89; Bacteria - 657; Metazoa - 4844; Fungi - 808; Plants - 441; Viruses - 15; Other Eukaryotes - 1939 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:14993383..14997785 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 129191.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.52 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.52 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 1148 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MSGSFTESFA DDGKLLLCVA ENGHSFEFQC SETTSVESVM RFVESVSGIA LSDQLLLSLD MKLEPQKLLS AFGLPASDRE VFVFNKAMLQ SNSHPPSPED 0101: VDLQDVADAL PPASLHEHHP LDDASDPALK ALPLYERQFR YHFHKGRTIY NCTVVKHENC ERLTREQKVQ QRAVEVATRN LEQYYRVIYQ NFLEFMKRYK 0201: HQHRLHSDLL MNFGRDIEKL RSAKIHPYLQ TESRKCLLDF VKEDNLKKAV ENCASSHRQF ENKIAQFQQM FVEVKRKVEE LFACRASLSM KNLEVTVKDH 0301: ERFIDEEKSI MQSLSKDVNT VKKLVDDCMS SQVSSSLRPH DAVSALGPMY EVHDKNHLPK MQACYNSISE LLDFCKNKKN EMNNFVHGYM QKITYVTYII 0401: KDAKLQFPVF REAMVRQDDL FADLKLVRGV GPAYRACLAE VVRRKASMKL YMGMAGQLAE KLAMKRETEV RKREEFLKTH GPFVPRDVLA SMGLYDTPTQ 0501: CDVNVAPYDT SLLNIEISDV DRYAPEFLVG LHSKIASLKS SLTMSGDSSL SAEPEEIGID TFDKDNFDDI LAASELIEIA GTSKMEVENA KLKADLASAI 0601: SRICSLGPQF EYEVLDESEV ENVLKNAADK TAEALQAKDE YEKHLLLMLK EKQMHCDSYE KRIRELEQRL SDEYLQGQRH NNKDVSGLNL MHEKVSEYKA 0701: EASSDVEGNK THVSGSEPMD EVSCVSNLTS KQPCKAREGM DENMVDSSQV LSQPLDSSML ESQQNNEKGG KDSEAGEMGV FLSNSSTAES PQKSLDDNVA 0801: TGRGLDAKDS GDIILELRNE LMEKSNKLSE MESKLNGAME EVSNLSRELE TNQKLLEESQ MNCAHLENCL HEAREEAQTH LCAADRRASQ YTALRASAVK 0901: MRGLFERFRS SVCAGSGIAD FADSLRTLAQ ALANSVNENE DDGTTEFRKC IRVLADKVSF LSKHREELLE KCQNLEATSE QTRKDLEEKK ELVKTLYTKH 1001: QLGKQANKEK ISFGRLEVHE IAAFVLNQAG HYEAINRNCP NYYLSSESEA LFTDHLPSRP TYIVGQIVHI ERQIVKLPSQ LSASASPEAG KTHHLCSDQG 1101: SRTLASSSIS TSTSATTTSN PYGLSSGCEY FIVTIAMLPD TAIHQQAS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)