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AT3G61710.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : AUTOPHAGY 6
Curator
Summary (TAIR10)
Encodes autophagy protein 6 (ATG6), required for pollen germination and plant development.
Computational
Description (TAIR10)
AUTOPHAGY 6 (ATG6); CONTAINS InterPro DOMAIN/s: Autophagy-related protein 6 (InterPro:IPR007243); Has 1006 Blast hits to 978 proteins in 347 species: Archae - 9; Bacteria - 233; Metazoa - 313; Fungi - 165; Plants - 83; Viruses - 12; Other Eukaryotes - 191 (source: NCBI BLink).
Protein Annotations
BioGrid:10658eggNOG:ENOG410XQ85eggNOG:KOG2751EMBL:AL132959
EMBL:AY039613EMBL:BT000508EMBL:CP002686EnsemblPlants:AT3G61710
EnsemblPlants:AT3G61710.1EnsemblPlants:AT3G61710.2EnsemblPlants:AT3G61710.3entrez:825344
ExpressionAtlas:Q9M367GeneID:825344Genevisible:Q9M367GO:GO:0000045
GO:GO:0000407GO:GO:0006623GO:GO:0006995GO:GO:0009846
GO:GO:0016023GO:GO:0032258GO:GO:0034271GO:GO:0034272
GO:GO:0044804GO:GO:0045324GO:GO:0050832hmmpanther:PTHR12768
hmmpanther:PTHR12768:SF4HOGENOM:HOG000240270InParanoid:Q9M367InterPro:IPR007243
KEGG:ath:AT3G61710KO:K08334MINT:MINT-8065701ncoils:Coil
OMA:YIPPARMPANTHER:PTHR12768PaxDb:Q9M367Pfam:PF04111
Pfam:Q9M367PhylomeDB:Q9M367PIR:T47963PRIDE:Q9M367
PRO:PR:Q9M367ProteinModelPortal:Q9M367Proteomes:UP000006548Reactome:R-ATH-1632852
RefSeq:NP_001030914.1RefSeq:NP_567116.1RefSeq:NP_974475.1SMR:Q9M367
STRING:3702.AT3G61710.1TAIR:AT3G61710tair10-symbols:ATATG6tair10-symbols:AtBECLIN1
tair10-symbols:ATG6tair10-symbols:BECLIN1UniGene:At.958UniProt:Q9M367
Coordinates (TAIR10) chr3:-:22839477..22842253
Molecular Weight (calculated) 58507.10 Da
IEP (calculated) 5.71
GRAVY (calculated) -0.55
Length 517 amino acids
Sequence (TAIR10)
(BLAST)
001: MRKEEIPDKS RTIPIDPNLP KWVCQNCHHS LTIVGVDSYA GKFFNDPPPS ATQGSSIHGA NSVLGSTRMD NSFVVLPRHK PPQSQGIPPR PRGASSPQPD
101: ATQSGKAMEE SFVVVYKSEP VSDSGGSHNL SLEVGQNGPL HSNTSGFNAT INVLTRAFDI ARTQTQVEQP LCLECMRVLS DKLEKEVEDV TRDVEAYEAC
201: VQRLEGETQD VLSEADFLKE KKKIEEEERK LVAAIEETEK QNAEVNHQLK ELEFKGNRFN ELEDRYWQEF NNFQFQLIAH QEERDAILAK IEVSQAHLEL
301: LNKTNVLIDA FPIRNDGEFG TINNFRLGRL PAIKVEWDEI NAAWGQACLL LHTMCNYFRP KFQCQVKIQP MGSYPRIVDS NNETYELFGP VNLFWSTRYD
401: KAMTLYLMCL KDFADFANSK DQENNIPPDN CLNLPYKIEK DKVLGYSITQ SFNKQESWTK ALKYTLCNLK WALYWFVGNT NFQPLSATVS LPSNISAAGS
501: LYAKRGPDSS KPSCKKT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)