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AT1G54710.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.977
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : homolog of yeast autophagy 18 (ATG18) H
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
homolog of yeast autophagy 18 (ATG18) H (ATG18H); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to starvation; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), Breast carcinoma amplified sequence 3 (InterPro:IPR022175), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: homolog of yeast autophagy 18 (ATG18) G (TAIR:AT1G03380.1); Has 852 Blast hits to 850 proteins in 188 species: Archae - 0; Bacteria - 4; Metazoa - 369; Fungi - 255; Plants - 157; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XSW7eggNOG:KOG2109EMBL:AC005388EMBL:AF360222
EMBL:AY142626EMBL:CP002684EnsemblPlants:AT1G54710EnsemblPlants:AT1G54710.1
entrez:841912Gene3D:2.130.10.10GeneID:841912Genevisible:Q8H1Q5
GO:GO:0005737GO:GO:0005774GO:GO:0006914GO:GO:0015031
GO:GO:0034045GO:GO:0042594Gramene:AT1G54710.1hmmpanther:PTHR13268
hmmpanther:PTHR13268:SF0HOGENOM:HOG000238347InParanoid:Q8H1Q5InterPro:IPR001680
InterPro:IPR015943InterPro:IPR017986InterPro:IPR022175iPTMnet:Q8H1Q5
KEGG:ath:AT1G54710OMA:SHELKDQPaxDb:Q8H1Q5Pfam:PF00400
Pfam:PF12490Pfam:Q8H1Q5PhylomeDB:Q8H1Q5PIR:C96589
PRIDE:Q8H1Q5PRO:PR:Q8H1Q5ProteinModelPortal:Q8H1Q5Proteomes:UP000006548
RefSeq:NP_564664.1SMART:SM00320SMR:Q8H1Q5STRING:3702.AT1G54710.1
SUPFAM:SSF50978TAIR:AT1G54710tair10-symbols:ATATG18Htair10-symbols:ATG18H
UniGene:At.21107UniGene:At.64867UniProt:Q8H1Q5
Coordinates (TAIR10) chr1:-:20417019..20420733
Molecular Weight (calculated) 100519.00 Da
IEP (calculated) 5.56
GRAVY (calculated) -0.41
Length 927 amino acids
Sequence (TAIR10)
(BLAST)
001: MKSNSKVNIN NNGDNHNQTK NNGTNGFLPN SLKFISTCIR TASSGVRSAS ASVAASLSSD SHELKDQVLW SSFDRLHTSE SSFKNVLLLG YTNGFQVLDI
101: DDSNDVTEFV SRRDDPVTFL QMQPLPAKCD GVEGFRSSHP ILLAVADEAK GSGPIVTSRD GSVRNGYEDP LALSPTVVRF YSLRSHNYVH VLRFRSTVYM
201: VRCSPRIVAV GLGSQIYCFD ALTLENKFSV LSYPVPQLGN QGISGVNVGY GPMAVGARWL AYASNSPLSS SIGRLSPQNV TPPGVSPSTS PNNGNLVARY
301: AMESSKHLAA GLLNLGDKGY KTISKYCQDL KHDGPGPSLS SSPGRKVGRV GSHSAESDVV GTVIVKDFES RAIIAQFRAH TSPISALCFD PSGTLLVTAS
401: IHGNNINVFR IMPTPTKNGP GAQSYDWSSS HVPLYKLHRG MTSAVIQDIC FSSYSQWIAI VSSKSTCHIY VLSPFGGENV LEIRNSQFDG PTLAPTLSLP
501: WWSSPSFMTT HFSYPPPASV TLSVVSRIKC NNFFHAASSV VGKPTFPSGC LAAVFHQSVP QESQSSSPAL DYLLVYTPSG HVVQYKLIPS LGGDQAESNT
601: RNGATSGLTS EEELRVKVEP VQCWDVCRRA DWPEREENIC GLTYGGRKNA ELTVDTSDSE DQTKPLEKHH VYLANAEVLI NSGRKPIWQN SEISFYPMYP
701: PDSDGKNLNS HQGGGETEIG KVSANEVDIR RKDLLPVYDN FHSVYTSMRN RGFSGERDSD SSSSSDPGQV KEMHPFNGMV YPEDEERRGS AHFALTPNQN
801: PHTGIVTFKQ PVVSISSAVK DTDYIDDDAH VLPKNASLPA ETKIENSSGI SGDSNVSSNR SDMSMNAADE GEGPIDGSPN FEQFFEEVVS NETVTETEHK
901: DAPSDGKLDD DEDDDMLGGV FAFSEEG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)