AT3G52250.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Duplicated homeodomain-like superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a protein with a putative role in mRNA splicing. | ||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Duplicated homeodomain-like superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: RNA splicing; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), SANT, eukarya (InterPro:IPR017884); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:19376629..19383100 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 181760.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.07 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.67 | ||||||||||||||||||||||||||||||||||||
| Length | 1656 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MPQDHASWDR KELLRQRKHD RPEQSFESPP FRWRDSPSSH HVPREFSSRL GSGDFRRPSC HGKQGGRHQF VEETSHGYTS SRSSARMFDN YRPSASRGDW 0101: RYTRNCRDDR VSVSQKEWKC NTWEMSNGSS RSFERPFGIR NGRRSVDERP LHASDTHSTV VNSLDPANSA HYLDNEISTP VRSLKIKNEH KFSDQRLSLP 0201: SDPHSECISL FERPSSENNY GNKVCSPAKQ CNDLMYGRRL VSDNSLDAPI PNAELEGTWE QLRLKDPQDN NSLHGINDID GDRKCAKESS LGATGKLPLW 0301: NSSGSFASQS SGFSHSSSLK SLGAVDSSDR KIEVLPKIVT VTQSSSGDAT ACATTTHLSE EMSSRKKQRL GWGEGLAKYE KKKVDVNPNE DGTTLMENGL 0401: EELHSLNKNI ADKSPTAAIV PDYGSPTTPS SVACSSSPGF ADKSSPKAAI AASDVSNMCR SPSPVSSIHL ERFPINIEEL DNISMERFGC LLNELLGTDD 0501: SGTGDSSSVQ LTSMNTLLAW KGEILKAVEM TESEIDLLEN KHRTLKLEGR RHSRVVGPSS YCCDGDANVP KEQASCSLDP KATASSVAKT LVRAPVHQAG 0601: LAKVPADVFE DSPGEVKPLS QSFATVEREE DILPIPSMKA AVSSKEINTP AFANQETIEV SSADDSMASK EDLFWAKLLS ANKKYACESS GVFNQLLPRD 0701: FNSSDNSRFP GICQTQFDSH VQEKIADRVG LLRAREKILL LQFKAFQLSW KKDLDQLALA KYQSKSSKKT ELYPNAKNGG YLKLPQSVRL RFSSSAPRRD 0801: SVVPTTELVS YMEKLLPGTH LKPFRDILKM PAMILDEKER VMSRFISSNG LIEDPCDVEK ERTMINPWTS EEKEIFLNLL AMHGKDFKKI ASSLTQKTTA 0901: DCIDYYYKNH KSDCFGKIKK QRAYGKEGKH TYMLAPRKKW KREMGAASLD ILGDVSIIAA NAGKVASTRP ISSKKITLRG CSSANSLQHD GNNSEGCSYS 1001: FDFPRKRTAG ADVLAVGPLS PEQINSCLRT SVSSRERCMD HLKFNHVVKK PRISHTLHNE NSNTLHNENS NEEDDSCSEE SCGETGPIHW TDDERSAFIQ 1101: GFSLFGKNFA SISRYVGTRS PDQCKVFFSK VRKCLGLESI KFGSGNVSTS VSVDNGNEGG GSDLEDPCPM ESNSGIVNNG VCAKMGMNSP TSPFNMNQDG 1201: VNQSGSANVK ADLSRSEEEN GQKYLCLKDD NNLVNNAYVN GGFPSLVSES CRDLVDINTV ESQSQAAGKS KSNDLMSMEI DEGVLTSVTI SSEPLYCGLS 1301: VLSNVIVETP TEISRKGSGD QGATMPKFSS KNQDGVMQAA NRTRNSGLEP ESAPSGFRYP ECLHHVPIEV CTENPIGVSA PRGNPNCHAE SESGNSLVGQ 1401: VDETHDLGWP KNNLELDGRL QVLGHVNPEQ IGLLKATNTE SCQNPQRSVT QDLSRISRSK SDLIVKTQRT GEGFSLTKCT SSAPKPLAVS HKEGRSGHSR 1501: SHSFSLSDTE RLHKNGDVKL FGTVLTTDEN GIKQKHNPCG IVRSSSTLSR DHDTRHHYIN QQHLQNVPIT SYGFWDGNRI QTGLTSLPES AKLLASCPEA 1601: FSTHLKQQVG NSKEILVDVN GGILSFGKHN EDRAESSSAK DEGNIGGVNG VAEAAT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)