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AT1G20910.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : ARID/BRIGHT DNA-binding domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ARID/BRIGHT DNA-binding domain-containing protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978), ARID/BRIGHT DNA-binding domain (InterPro:IPR001606); BEST Arabidopsis thaliana protein match is: ARID/BRIGHT DNA-binding domain-containing protein (TAIR:AT1G76510.2); Has 727 Blast hits to 727 proteins in 115 species: Archae - 0; Bacteria - 0; Metazoa - 457; Fungi - 67; Plants - 164; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Y2APeggNOG:KOG2744EMBL:AB493470EMBL:AC007369
EMBL:CP002684EnsemblPlants:AT1G20910EnsemblPlants:AT1G20910.1entrez:838684
Gene3D:1.10.150.60GeneID:838684Genevisible:C0SUW7GO:GO:0003677
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0006355
Gramene:AT1G20910.1hmmpanther:PTHR15348hmmpanther:PTHR15348:SF6HOGENOM:HOG000239411
InParanoid:C0SUW7InterPro:IPR001606InterPro:IPR002068InterPro:IPR008978
KEGG:ath:AT1G20910OMA:SAVMSMHPaxDb:C0SUW7Pfam:C0SUW7
Pfam:PF01388Pfscan:PS01031Pfscan:PS51011PhylomeDB:C0SUW7
PIR:G86341PRIDE:C0SUW7PRO:PR:C0SUW7PROSITE:PS01031
PROSITE:PS51011ProteinModelPortal:C0SUW7Proteomes:UP000006548RefSeq:NP_173515.2
SMART:SM00501SMR:C0SUW7STRING:3702.AT1G20910.1SUPFAM:SSF46774
SUPFAM:SSF49764TAIR:AT1G20910UniGene:At.43690UniProt:C0SUW7
Coordinates (TAIR10) chr1:-:7277209..7280635
Molecular Weight (calculated) 44267.70 Da
IEP (calculated) 6.87
GRAVY (calculated) -0.53
Length 398 amino acids
Sequence (TAIR10)
(BLAST)
001: MVDTEMQEQD VTFGALVETK YLEEEPLEPE NDHNPSEIPQ PLLLGDGQAN NGHGMNGGAV GVVDHSERKT RRVQMLSPKT EGENAKKRKT WLLDSEAQGT
101: DEAGTPVEQV AFLREVEAFY KESFLEFKPP KFYGQPLNIL KLWRAVVNLG GYEVVTTNKL WRQVGESFNP PKTCTTVSYT FRNFYEKALL EYEKCLRNNG
201: ELNLPGSTLI LSSSVEKEPS SHQGSGSGRA RRDSAARAMQ GWHAQRLVGS GEVTAPAVKD KGLISTPKHK KLKSIGLQKH KQQTSMDHVV TNEADKQLAA
301: EVVDVGPVAD WVKINVKESK DSFEIFALVP GLLRKEVRIQ SDPAGKVVIT GQPEQLDNPW GITPFKKIVD LSARIDPLHT SAVMSMHGRL FIRVPFEQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)