AT5G41970.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Metal-dependent protein hydrolase | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Metal-dependent protein hydrolase; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Metal-dependent protein hydrolase (InterPro:IPR003226); BEST Arabidopsis thaliana protein match is: Metal-dependent protein hydrolase (TAIR:AT3G49320.1); Has 677 Blast hits to 672 proteins in 331 species: Archae - 0; Bacteria - 213; Metazoa - 146; Fungi - 144; Plants - 55; Viruses - 0; Other Eukaryotes - 119 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:16791198..16792961 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 42301.70 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 6.24 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.29 | ||||||||||||||||||||||||||||
| Length | 373 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMFSVTKGLI RNLALFQVRL PPLVAAVMAP SSVVRVYSTA TSPSPSEISV KKVGTHNGSF HCDEALGCFM IRLVDKFSGA DIVRSRDPKI LAELDAVLDV 101: GGVYDPEHDR YDHHQKGFEE VFGHGFNTKL SSAGLVYKHF GKEIIAKELN VEQDHPDVLR LFLAVYKSFM EAIDAVDNGI NRYDTDQPPR YVNNTHLSPR 201: VGRLNLDWID PDQSQEKENE AFQRAMALAG KEFLESVQFH ARSWLPARSI VMQCLEERFK TDPSGEIMIL DRFCPWKLHL FELEQEMKIE PLIKYVIYQD 301: ERAKQWRVQA VAVAPDRFEN RKPLPEKWRG LRDEELSKAA EIPGCVFVHM SGFIGGNQSY DGALSMAQTA LTL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)