AT3G11400.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 1.000 ASURE: cytosol What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : eukaryotic translation initiation factor 3G1 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
One of the 2 genes that code for the G subunit of eukaryotic initiation factor 3 (EIF3). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
eukaryotic translation initiation factor 3G1 (EIF3G1); FUNCTIONS IN: RNA binding, translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: eukaryotic translation initiation factor 3 complex, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Translation initiation factor 3, RNA-binding subunit (InterPro:IPR017334), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 3G2 (TAIR:AT5G06000.1); Has 999045 Blast hits to 996617 proteins in 36057 species: Archae - 21687; Bacteria - 600727; Metazoa - 203286; Fungi - 24712; Plants - 56079; Viruses - 69236; Other Eukaryotes - 23318 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:3578536..3580366 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 32716.60 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.45 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.71 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 294 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTIDSQQKTS KFRWGEMDED EDLDFLLPPK QVIGPDENGL KTTIEYKFND EENKVKITTR TRVRKLASAR LNKRAMERRN WPKFGDAANE EAGSHLTMVS 101: TEEILLERPR APGTKADESK ATGDGLSQLG KGGAVLMVCR ICHKKGDHWT SKCPYKDLAA PTDVFIDKPP TGESSTMSAA PGTGKAAYVP PSMRAGADRS 201: AVGSDMRRRN DENSVRVTNL SEDTREPDLM ELFHPFGAVT RVYVAIDQKT GVSRGFGFVN FVSREDAQRA INKLNGYGYD NLILRVEWAT PRPT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)