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AT5G10360.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31871212 (2020): mitochondrion
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31541795 (2020): plasma membrane
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:30961429 (2019): nucleus
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25641898 (2015): plasma membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22550958 (2012): plastid
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:22318864 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21166475 (2011): cytosol
  • PMID:19334764 (2009): plasma membrane
  • PMID:17934214 (2008): cytosol
  • PMID:17317660 (2007): plasma membrane
  • PMID:15734919 (2005): cytosol cytosolic ribosomes
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Ribosomal protein S6e
Curator
Summary (TAIR10)
RPS6A and RPS6B are fully redundant and essential during gametogenesis.
Computational
Description (TAIR10)
embryo defective 3010 (EMB3010); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: growth, translation, embryo development ending in seed dormancy; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, plasma membrane; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S6e (InterPro:IPR001377), Ribosomal protein S6, eukaryotic (InterPro:IPR014401), Ribosomal protein S6e, conserved site (InterPro:IPR018282); BEST Arabidopsis thaliana protein match is: ribosomal protein S6 (TAIR:AT4G31700.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:16178eggNOG:COG2125eggNOG:KOG1646EMBL:AL353995
EMBL:AY045594EMBL:AY057634EMBL:AY093783EMBL:CP002688
EMBL:Y14052EMBL:Z26511EnsemblPlants:AT5G10360EnsemblPlants:AT5G10360.1
entrez:830900ExpressionAtlas:P51430GeneID:830900Genevisible:P51430
GO:GO:0003735GO:GO:0005829GO:GO:0005886GO:GO:0006364
GO:GO:0006412GO:GO:0009506GO:GO:0009735GO:GO:0022626
GO:GO:0022627GO:GO:0042274hmmpanther:PTHR11502hmmpanther:PTHR11502:SF10
HOGENOM:HOG000190952InParanoid:P51430IntAct:P51430InterPro:IPR001377
InterPro:IPR014401InterPro:IPR018282iPTMnet:P51430ncoils:Coil
OMA:EGKKERFPANTHER:PTHR11502PaxDb:P51430Pfam:P51430
Pfam:PF01092PhylomeDB:P51430PIR:T50003PIRSF:PIRSF002129
PRIDE:P51430PRO:PR:P51430PROSITE:PS00578ProteinModelPortal:P51430
Proteomes:UP000006548Reactome:R-ATH-156827Reactome:R-ATH-166208Reactome:R-ATH-1799339
Reactome:R-ATH-72689Reactome:R-ATH-72695Reactome:R-ATH-72702Reactome:R-ATH-72706
Reactome:R-ATH-975956Reactome:R-ATH-975957RefSeq:NP_196598.1scanprosite:PS00578
SMART:SM01405SMR:P51430STRING:3702.AT5G10360.1TAIR:AT5G10360
tair10-symbols:EMB3010tair10-symbols:RPS6BUniGene:At.217UniGene:At.22261
UniProt:P51430
Coordinates (TAIR10) chr5:-:3258734..3260142
Molecular Weight (calculated) 28163.60 Da
IEP (calculated) 11.51
GRAVY (calculated) -0.81
Length 249 amino acids
Sequence (TAIR10)
(BLAST)
001: MKFNVANPTT GCQKKLEIDD DQKLRAFFDK RLSQEVSGDA LGEEFKGYVF KIMGGCDKQG FPMKQGVLTP GRVRLLLHRG TPCFRGHGRR TGERRRKSVR
101: GCIVSPDLSV LNLVIVKKGV SDLPGLTDTE KPRMRGPKRA SKIRKLFNLG KEDDVRKYVN TYRRTFTNKK GKKVSKAPKI QRLVTPLTLQ RKRARIADKK
201: KRIAKANSDA ADYQKLLASR LKEQRDRRSE SLAKKRSRLS SAPAKPVAA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)