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AT5G09510.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31541795 (2020): plasma membrane
  • PMID:30961429 (2019): nucleus
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22318864 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:15734919 (2005): cytosol cytosolic ribosomes
  • PMID:15496452 (2005): nucleus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Ribosomal protein S19 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein S19 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, nucleolus, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S15, eukaryotic/archaeal (InterPro:IPR005713), Ribosomal protein S19/S15 (InterPro:IPR002222), Ribosomal protein S19 conserved site (InterPro:IPR020934); BEST Arabidopsis thaliana protein match is: cytosolic ribosomal protein S15 (TAIR:AT1G04270.1); Has 8223 Blast hits to 8223 proteins in 3053 species: Archae - 256; Bacteria - 4027; Metazoa - 282; Fungi - 239; Plants - 1518; Viruses - 0; Other Eukaryotes - 1901 (source: NCBI BLink).
Protein Annotations
BioGrid:16088eggNOG:COG0185eggNOG:KOG0898EMBL:AL391712
EMBL:AY050966EMBL:AY085630EMBL:AY096616EMBL:CP002688
EnsemblPlants:AT5G09510EnsemblPlants:AT5G09510.1entrez:830810ExpressionAtlas:Q9FY64
Gene3D:3.30.860.10GeneID:830810Genevisible:Q9FY64GO:GO:0003723
GO:GO:0003735GO:GO:0005730GO:GO:0005774GO:GO:0006412
GO:GO:0009506GO:GO:0022626GO:GO:0022627HAMAP:MF_00531
hmmpanther:PTHR11880hmmpanther:PTHR11880:SF10HOGENOM:HOG000111561InParanoid:Q9FY64
IntAct:Q9FY64InterPro:IPR002222InterPro:IPR005713InterPro:IPR020934
InterPro:IPR023575OMA:IRTEMIGPANTHER:PTHR11880PaxDb:Q9FY64
Pfam:PF00203Pfam:Q9FY64PhylomeDB:Q9FY64PIRSF:PIRSF002144
PRIDE:Q9FY64PRINTS:PR00975PRO:PR:Q9FY64PROSITE:PS00323
ProteinModelPortal:Q9FY64Proteomes:UP000006548Reactome:R-ATH-156827Reactome:R-ATH-1799339
Reactome:R-ATH-72689Reactome:R-ATH-72695Reactome:R-ATH-72702Reactome:R-ATH-72706
Reactome:R-ATH-975956Reactome:R-ATH-975957RefSeq:NP_196513.1scanprosite:PS00323
SMR:Q9FY64STRING:3702.AT5G09510.1SUPFAM:SSF54570TAIR:AT5G09510
TIGRfam:TIGR01025TIGRFAMs:TIGR01025UniGene:At.10062UniProt:Q9FY64
Coordinates (TAIR10) chr5:-:2955698..2956554
Molecular Weight (calculated) 17073.20 Da
IEP (calculated) 11.05
GRAVY (calculated) -0.32
Length 152 amino acids
Sequence (TAIR10)
(BLAST)
001: MADVEPEVAA AGVPKKRTFK KFAFKGVDLD ALLDMSTDDL VKLFSSRIRR RFSRGLTRKP MALIKKLRKA KREAPAGEKP EPVRTHLRNM IIVPEMIGSI
101: IGVYNGKTFN QVEIKPEMIG HYLAEFSISY KPVKHGRPGV GATHSSRFIP LK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)