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AT5G23900.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:30447334 (2019): plasma membrane
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25641898 (2015): plasma membrane
  • PMID:24124904 (2013): plastid
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:22550958 (2012): plastid
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:21841088 (2011): mitochondrion
  • PMID:19334764 (2009): plasma membrane
  • PMID:17934214 (2008): cytosol
  • PMID:15821981 (2005): cytosol cytosolic ribosomes
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal protein L13e family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein L13e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic ribosome, ribosome, cytosolic large ribosomal subunit, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L13e, conserved site (InterPro:IPR018256), Ribosomal protein L13e (InterPro:IPR001380); BEST Arabidopsis thaliana protein match is: breast basic conserved 1 (TAIR:AT3G49010.3); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:17730eggNOG:COG4352eggNOG:KOG3295EMBL:AB005244
EMBL:AF378895EMBL:AY052746EMBL:CP002688EnsemblPlants:AT5G23900
EnsemblPlants:AT5G23900.1entrez:832455GeneID:832455Genevisible:Q9FF90
GO:GO:0003735GO:GO:0006412GO:GO:0016020GO:GO:0022625
GO:GO:0022626Gramene:AT5G23900.1hmmpanther:PTHR11722hmmpanther:PTHR11722:SF1
HOGENOM:HOG000170452InParanoid:Q9FF90InterPro:IPR001380InterPro:IPR018256
iPTMnet:Q9FF90KEGG:ath:AT5G23900KO:K02873OMA:IAHNHFR
PANTHER:PTHR11722PaxDb:Q9FF90Pfam:PF01294Pfam:Q9FF90
PhylomeDB:Q9FF90PRIDE:Q9FF90PRO:PR:Q9FF90PROSITE:PS01104
ProteinModelPortal:Q9FF90Proteomes:UP000006548Reactome:R-ATH-156827Reactome:R-ATH-1799339
Reactome:R-ATH-72689Reactome:R-ATH-72706Reactome:R-ATH-975956Reactome:R-ATH-975957
RefSeq:NP_197778.1scanprosite:PS01104SMR:Q9FF90STRING:3702.AT5G23900.1
TAIR:AT5G23900UniGene:At.8750UniProt:Q9FF90
Coordinates (TAIR10) chr5:-:8064176..8065081
Molecular Weight (calculated) 23486.70 Da
IEP (calculated) 11.64
GRAVY (calculated) -0.80
Length 206 amino acids
Sequence (TAIR10)
(BLAST)
001: MKHNNVIPSS HFRKHWQNYV KTWFNQPARK TRRRVARQKK AVKIFPRPTS GPLRPVVHGQ TLKYNMKVRA GKGFTLEELK VAGIPKKLAP TIGISVDHRR
101: KNRSLEGLQS NVQRLKTYKA KLVVFPRRSR QVKAGDSTPE ELANATQVQG DYMPIASVKA AMELVKLTAD LKAFKAYDKI RLERTNARHA GARAKRAAEA
201: EKEEKK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)