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AT2G22740.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : SU(VAR)3-9 homolog 6
Curator
Summary (TAIR10)
Encodes a SU(VAR)3-9 homolog, a methyltransferase involved in histone methylation. The protein was shown to bind to methylated cytosines of CG, CNG and CNN motifs but has a preference for the latter two. This is a member of a subfamily of SET proteins that shares a conserved SRA domain.
Computational
Description (TAIR10)
SU(VAR)3-9 homolog 6 (SUVH6); FUNCTIONS IN: methyl-CpNpG binding, methyltransferase activity, methyl-CpG binding, methyl-CpNpN binding; INVOLVED IN: histone methylation; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214), SRA-YDG (InterPro:IPR003105), Pre-SET zinc-binding sub-group (InterPro:IPR003606), Pre-SET domain (InterPro:IPR007728), Post-SET domain (InterPro:IPR003616); BEST Arabidopsis thaliana protein match is: SU(VAR)3-9 homolog 5 (TAIR:AT2G35160.1); Has 4885 Blast hits to 4696 proteins in 447 species: Archae - 0; Bacteria - 363; Metazoa - 2323; Fungi - 494; Plants - 1133; Viruses - 0; Other Eukaryotes - 572 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G22740-MONOMERBioCyc:ARA:GQT-1934-MONOMEREC:2.1.1.43eggNOG:COG2940
eggNOG:COG3440eggNOG:KOG1082EMBL:AC006340EMBL:AF344449
EMBL:AY065374EMBL:BT002751EMBL:CP002685EnsemblPlants:AT2G22740
EnsemblPlants:AT2G22740.1EnsemblPlants:AT2G22740.2entrez:816804Gene3D:2.30.280.10
GeneID:816804Genevisible:Q8VZ17GO:GO:0000775GO:GO:0005634
GO:GO:0008168GO:GO:0008270GO:GO:0008327GO:GO:0010428
GO:GO:0010429GO:GO:0016571GO:GO:0018024Gramene:AT2G22740.1
Gramene:AT2G22740.2hmmpanther:PTHR22884hmmpanther:PTHR22884:SF370HOGENOM:HOG000154454
InParanoid:Q8VZ17InterPro:IPR001214InterPro:IPR003105InterPro:IPR003616
InterPro:IPR007728InterPro:IPR015947InterPro:IPR025794KEGG:ath:AT2G22740
KO:K11420OMA:RRIGNDEPaxDb:Q8VZ17Pfam:PF00856
Pfam:PF02182Pfam:PF05033Pfam:Q8VZ17Pfscan:PS50280
Pfscan:PS50867Pfscan:PS50868Pfscan:PS51015Pfscan:PS51575
PhylomeDB:Q8VZ17PIR:C84616PRIDE:Q8VZ17PRO:PR:Q8VZ17
PROSITE:PS50280PROSITE:PS50867PROSITE:PS50868PROSITE:PS51015
PROSITE:PS51575ProteinModelPortal:Q8VZ17Proteomes:UP000006548RefSeq:NP_850030.1
RefSeq:NP_973514.1SMART:SM00317SMART:SM00466SMART:SM00468
SMART:SM00508SMR:Q8VZ17STRING:3702.AT2G22740.1SUPFAM:SSF82199
SUPFAM:SSF88697TAIR:AT2G22740tair10-symbols:SDG23tair10-symbols:SUVH6
UniGene:At.28511UniProt:Q8VZ17
Coordinates (TAIR10) chr2:-:9664256..9666628
Molecular Weight (calculated) 87481.40 Da
IEP (calculated) 7.58
GRAVY (calculated) -0.49
Length 790 amino acids
Sequence (TAIR10)
(BLAST)
001: MEMGVMENLM VHTEISKVKS QSNGEVEKRG VSVLENGGVC KLDRMSGLKF KRRKVFAVRD FPPGCGSRAM EVKIACENGN VVEDVKVVES LVKEEESLGQ
101: RDASENVSDI RMAEPVEVQP LRICLPGGDV VRDLSVTAGD ECSNSEQIVA GSGVSSSSGT ENIVRDIVVY ADESSLGMDN LDQTQPLEIE MSDVAVAKPR
201: LVAGRKKAKK GIACHSSLKV VSREFGEGSR KKKSKKNLYW RDRESLDSPE QLRILGVGTS SGSSSGDSSR NKVKETLRLF HGVCRKILQE DEAKPEDQRR
301: KGKGLRIDFE ASTILKRNGK FLNSGVHILG EVPGVEVGDE FQYRMELNIL GIHKPSQAGI DYMKYGKAKV ATSIVASGGY DDHLDNSDVL TYTGQGGNVM
401: QVKKKGEELK EPEDQKLITG NLALATSIEK QTPVRVIRGK HKSTHDKSKG GNYVYDGLYL VEKYWQQVGS HGMNVFKFQL RRIPGQPELS WVEVKKSKSK
501: YREGLCKLDI SEGKEQSPIS AVNEIDDEKP PLFTYTVKLI YPDWCRPVPP KSCCCTTRCT EAEARVCACV EKNGGEIPYN FDGAIVGAKP TIYECGPLCK
601: CPSSCYLRVT QHGIKLPLEI FKTKSRGWGV RCLKSIPIGS FICEYVGELL EDSEAERRIG NDEYLFDIGN RYDNSLAQGM SELMLGTQAG RSMAEGDESS
701: GFTIDAASKG NVGRFINHSC SPNLYAQNVL YDHEDSRIPH VMFFAQDNIP PLQELCYDYN YALDQVRDSK GNIKQKPCFC GAAVCRRRLY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)