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AT3G54930.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.763
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein phosphatase 2A regulatory B subunit family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein phosphatase 2A regulatory B subunit family protein; FUNCTIONS IN: protein phosphatase type 2A regulator activity; INVOLVED IN: signal transduction; LOCATED IN: chloroplast, protein phosphatase type 2A complex; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2A, regulatory B subunit, B56 (InterPro:IPR002554); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2A regulatory B subunit family protein (TAIR:AT5G03470.1); Has 1209 Blast hits to 1201 proteins in 194 species: Archae - 0; Bacteria - 0; Metazoa - 572; Fungi - 149; Plants - 304; Viruses - 0; Other Eukaryotes - 184 (source: NCBI BLink).
Protein Annotations
BioGrid:9974eggNOG:ENOG410XQJWeggNOG:KOG2085EMBL:AJ276037
EMBL:AK175667EMBL:AL049655EMBL:BT010562EMBL:CP002686
EnsemblPlants:AT3G54930EnsemblPlants:AT3G54930.1entrez:824658GeneID:824658
Genevisible:Q9SV41GO:GO:0000159GO:GO:0007165GO:GO:0008601
Gramene:AT3G54930.1hmmpanther:PTHR10257hmmpanther:PTHR10257:SF20HOGENOM:HOG000067326
InterPro:IPR002554InterPro:IPR016024KEGG:ath:AT3G54930KO:K11584
MINT:MINT-8060940OMA:ERCIGIGPANTHER:PTHR10257PaxDb:Q9SV41
Pfam:PF01603Pfam:Q9SV41PhylomeDB:Q9SV41PIR:T06727
PIRSF:PIRSF028043PRIDE:Q9SV41PRO:PR:Q9SV41ProteinModelPortal:Q9SV41
Proteomes:UP000006548Reactome:R-ATH-198753Reactome:R-ATH-202670RefSeq:NP_191053.1
SMR:Q9SV41STRING:3702.AT3G54930.1SUPFAM:SSF48371TAIR:AT3G54930
UniGene:At.35066UniProt:Q9SV41
Coordinates (TAIR10) chr3:-:20351084..20352659
Molecular Weight (calculated) 57548.10 Da
IEP (calculated) 6.24
GRAVY (calculated) -0.36
Length 497 amino acids
Sequence (TAIR10)
(BLAST)
001: MFNKIIKLGQ KKFNKSDQHH QDNNNNNNNT STNTVVRGSR TTTPAPSSVS NGESQTTAQS PSQTPNHPMF TTTPILEVLP LLKDVSSSDR PLLFMKKAHM
101: CSCHCDFSDT LIMPREKEIK RQTLLELVDF LHSSSGKVNE TMQSELIRMV SANIFRCLPP AYHENTGAPP EGNDPEEEEP YLEPWWPHLQ LVYELLLRYV
201: VSSEIEPKTA KKFINHTFVS RLLDLFDSED PREREYLKTV LHRIYGKFIF HRPFIRCSIY NIFYKFLYET ERCIGIGELL EILGSVINGF TVPMREEHRL
301: YLVKAILPLH KSKGISIYHQ QLAYCVTQFV EKDYKLADTV IRGLLKFWPL TNCQKEVLFL GELEEVLDAT EPSEFQQCVV PLFTQIGKCL NSAHFQVAER
401: ALFLWNNEHI VGLIAQNKDV IFPIIFEALE RNMKGHWNQA VHGLSENVRR MFLEMDTELF EECEKQYLEN EAKACELLEQ RELTWKRLEE AASLAAN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)