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AT3G07210.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 97 Blast hits to 85 proteins in 31 species: Archae - 0; Bacteria - 14; Metazoa - 7; Fungi - 19; Plants - 37; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IH33eggNOG:ENOG410YC6WEMBL:AC012395EMBL:AY034980
EMBL:AY074530EMBL:AY086322EMBL:CP002686EnsemblPlants:AT3G07210
EnsemblPlants:AT3G07210.1entrez:819909GeneID:819909Gramene:AT3G07210.1
hmmpanther:PTHR35729hmmpanther:PTHR35729:SF1HOGENOM:HOG000242930IntAct:Q9SFV1
InterPro:IPR009003KEGG:ath:AT3G07210OMA:CFCKGVGPhylomeDB:Q9SFV1
Proteomes:UP000006548RefSeq:NP_566301.1STRING:3702.AT3G07210.1SUPFAM:SSF50494
TAIR:AT3G07210UniGene:At.18708UniProt:Q9SFV1
Coordinates (TAIR10) chr3:-:2293000..2295119
Molecular Weight (calculated) 59804.50 Da
IEP (calculated) 8.05
GRAVY (calculated) -0.49
Length 547 amino acids
Sequence (TAIR10)
(BLAST)
001: MGVILDSWCF CKGVGKSEKM KGSIFTGKAP AMARISVSGP NGVTSGTGFL IHRNLLLTTH LNLPSISATE TAEVRLQNGV AAALFPHRFF ITSSVIDLTI
101: VGLDLVDGDS SSQSQLQQQP HYLKTCSKPN LDLGSVVYLL GYANQNELKI GEGKLVVATD NLIKLSTDEM IWSPGSAGFD VQGNLAFMIC DPRKLSTSPT
201: STSSSSSSSL KKDNNKTLMM QFGIPIPVIC DWLNQHWEGS LDEHTTKPKL PLIRLMSSGQ KSERSCTSFT MRRVFKPNDS ADVGTPSSSN TRDQTHPSSS
301: IAAEEEKEEE TSKTNPQVCG TTTHAQGIPT PEIYESPKLT SGPLRNETAQ VHLLDINFPP RIPKAITFHP ELNSLQSNHI VEEAEIVSEG SDAQIASTGS
401: VNGALSEVIS SSPPAAAHYV YNNHGYSSEE ETMYSAETAE SRNYPTPPRK SEFHHERVGR SQSCVSSSRW GTPQKSLNGR REMLEKQRSF VHGKKMHSQG
501: AMSQRSNDYY SPTVSSIMKK RINSSEQQII KPVPRPRAVS SSPRWAF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)