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AT3G19570.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Family of unknown function (DUF566)
Curator
Summary (TAIR10)
Encodes SCO3 (snowy cotyledon3), a member of a largely uncharacterized protein family unique to the plant kingdom. The sco3-1 mutation alters chloroplast morphology and development, reduces chlorophyll accumulation, impairs thylakoid formation and photosynthesis in seedlings, and results in photoinhibition under extreme CO(2) concentrations in mature leaves. SCO3 is targeted to the periphery of peroxisomes.
Computational
Description (TAIR10)
Family of unknown function (DUF566) ; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF566 (InterPro:IPR007573); BEST Arabidopsis thaliana protein match is: Family of unknown function (DUF566) (TAIR:AT1G49890.1); Has 4891 Blast hits to 1814 proteins in 299 species: Archae - 6; Bacteria - 1296; Metazoa - 1110; Fungi - 663; Plants - 249; Viruses - 59; Other Eukaryotes - 1508 (source: NCBI BLink).
Protein Annotations
BioGrid:6827eggNOG:ENOG410IH8JeggNOG:ENOG4111T26EMBL:AK118290
EMBL:AP000417EMBL:BT005534EMBL:CP002686EnsemblPlants:AT3G19570
EnsemblPlants:AT3G19570.1EnsemblPlants:AT3G19570.2entrez:821494ExpressionAtlas:Q8GXD9
GeneID:821494Genevisible:Q8GXD9GO:GO:0005777GO:GO:0009658
hmmpanther:PTHR31807hmmpanther:PTHR31807:SF4HOGENOM:HOG000239836InParanoid:Q8GXD9
IntAct:Q8GXD9InterPro:IPR007573iPTMnet:Q8GXD9KEGG:ath:AT3G19570
OMA:MHAMASSPaxDb:Q8GXD9Pfam:PF04484PhylomeDB:Q8GXD9
PIR:T52384PRIDE:Q8GXD9PRO:PR:Q8GXD9Proteomes:UP000006548
RefSeq:NP_188591.2RefSeq:NP_850614.1STRING:3702.AT3G19570.2TAIR:AT3G19570
tair10-symbols:QWRF1tair10-symbols:SCO3UniGene:At.38386UniProt:Q3EB40
Coordinates (TAIR10) chr3:+:6797778..6801293
Molecular Weight (calculated) 68439.80 Da
IEP (calculated) 11.07
GRAVY (calculated) -0.59
Length 627 amino acids
Sequence (TAIR10)
(BLAST)
001: MVAAIPQGAA ISNTDSKNPP PRDRQDKPQL TANNGGLQRR PRAAKNVPSR YLSPSPSHST TTTTTTATST STSSSSSVIL RSSKRYPSPL LSRTTNSASN
101: LVYTPSSLPK RSQSVDRRRP SAVSDTRTEM SAATKMLITS TRSLSVSFQG EAFSFPISKK KETATPVSHR KCTPERRRAT PVRDQRENSK PVDQQLWPGA
201: SRRGSSESVV PNSLSRSVDS DSDDGRKLGS GFVGRSMLQH SQSSRVSGDG RLNLGFVGGD GMLEMRDENK ARQSTHPRLA SSVSCDFTAS DTDSVSSGST
301: NGAHECGSGE VSKTRSLPRN GMASTKFWQE TNSRLRRMQD PGSPQCSSPS SRISSISSKF SQSKRFSSDS PLTSSPRGMT SPIRGATRPA SPSKLWATAT
401: SAPARTSSSP SRVRNGVSEQ MNAYNRTLPS ILCFSADIRR GKIGEDRVMD AHLLRLLYNR DLQWRFANAR ADSTLMVQRL SAEKILWNAW VSISELRHSV
501: TLKRIKLLLM RQKLKLASIL KEQMCYLEEW SLLDRNHSNS LSGATEALKA STLRLPVSGK AVVDIQDLKH AVSSAVDVMH AMVSSIFSLT SKVEEMNSVM
601: AEMVNITGKE EVLLEQCQGF LTRHASC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)