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AT2G27810.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31541795 (2020): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:22318864 (2012): plasma membrane
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:20843791 (2010): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:15308754 (2004): plasma membrane
  • PMID:14506206 (2003): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : nucleobase-ascorbate transporter 12
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
nucleobase-ascorbate transporter 12 (NAT12); FUNCTIONS IN: transmembrane transporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xanthine/uracil/vitamin C permease (InterPro:IPR006043); BEST Arabidopsis thaliana protein match is: Xanthine/uracil permease family protein (TAIR:AT4G38050.1); Has 9528 Blast hits to 9485 proteins in 1925 species: Archae - 69; Bacteria - 7579; Metazoa - 494; Fungi - 167; Plants - 469; Viruses - 16; Other Eukaryotes - 734 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-925-MONOMERBioCyc:ARA:GQT-926-MONOMERBioCyc:ARA:GQT-927-MONOMEReggNOG:COG2233
eggNOG:KOG1292EMBL:AC005824EMBL:AY099545EMBL:AY444865
EMBL:BT002121EMBL:CP002685EnsemblPlants:AT2G27810EnsemblPlants:AT2G27810.1
entrez:817328ExpressionAtlas:Q3E7D0GeneID:817328Genevisible:Q3E7D0
GO:GO:0005886GO:GO:0015207GO:GO:0015208GO:GO:0015210
GO:GO:0015294GO:GO:0016021GO:GO:0035344GO:GO:0098655
GO:GO:0098702GO:GO:0098710GO:GO:0098721hmmpanther:PTHR11119
hmmpanther:PTHR11119:SF28HOGENOM:HOG000038202InParanoid:Q3E7D0InterPro:IPR006043
InterPro:IPR029946iPTMnet:Q3E7D0OMA:DWANEMPPANTHER:PTHR11119
PANTHER:PTHR11119:SF28PaxDb:Q3E7D0Pfam:PF00860Pfam:Q3E7D0
PhylomeDB:Q3E7D0PIR:C84677PRIDE:Q3E7D0PRO:PR:Q3E7D0
ProteinModelPortal:Q3E7D0Proteomes:UP000006548Reactome:R-ATH-196836RefSeq:NP_850108.1
RefSeq:NP_973550.2SMR:Q3E7D0STRING:3702.AT2G27810.1TAIR:AT2G27810
tair10-symbols:ATNAT12tair10-symbols:NAT12TCDB:2.A.40.6.6TMHMM:TMhelix
UniGene:At.27781UniGene:At.67338UniProt:Q3E7D0
Coordinates (TAIR10) chr2:+:11852338..11855988
Molecular Weight (calculated) 76678.50 Da
IEP (calculated) 9.79
GRAVY (calculated) 0.20
Length 709 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSSDPKPGP KPGPWPPTPE SAAMPPSSWA KKTGFRPKFS GETTATDSSS GQLSLPVRAK QQETQPDLEA GQTRLRPPPP VSAAVTNGET DKDKKEKPPP
101: PPPGSVAVPV KDQPVKRRRD SDGVVGRSNG PDGANGSGDP VRRPGRIEET VEVLPQSMDD DLVARNLHMK YGLRDTPGLV PIGFYGLQHY LSMLGSLILV
201: PLVIVPAMGG SHEEVANVVS TVLFVSGITT LLHTSFGSRL PLIQGPSFVF LAPALAIINS PEFQGLNGNN NFKHIMRELQ GAIIIGSAFQ AVLGYSGLMS
301: LILRLVNPVV VAPTVAAVGL SFYSYGFPLV GKCLEIGVVQ ILLVIIFALY LRKISVLSHR IFLIYAVPLS LAITWAAAFL LTETGAYTYK GCDPNVPVSN
401: VVSTHCRKYM TRMKYCRVDT SHALSSAPWF RFPYPLQWGV PLFNWKMAFV MCVVSVIASV DSVGSYHASS LLVASRPPTR GVVSRAIGLE GFTSVLAGLW
501: GTGTGSTTLT ENVHTIAVTK MGSRRVVELG ACVLVIFSLV GKVGGFLASI PQVMVASLLC FMWAMFTALG LSNLRYSEAG SSRNIIIVGL SLFFSLSVPA
601: YFQQYGISPN SNLSVPSYYQ PYIVSSHGPF KSQYKGMNYV MNTLLSMSMV IAFIMAVILD NTVPGSKQER GVYVWSDSET ATREPALAKD YELPFRVGRF
701: FRWVKWVGI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)