AT1G77630.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Peptidoglycan-binding LysM domain-containing protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Peptidoglycan-binding LysM domain-containing protein; INVOLVED IN: cell wall macromolecule catabolic process; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidoglycan-binding lysin domain (InterPro:IPR018392), Peptidoglycan-binding Lysin subgroup (InterPro:IPR002482); BEST Arabidopsis thaliana protein match is: lysm domain GPI-anchored protein 1 precursor (TAIR:AT1G21880.2); Has 505 Blast hits to 496 proteins in 62 species: Archae - 0; Bacteria - 70; Metazoa - 4; Fungi - 2; Plants - 415; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:29173726..29175387 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 44154.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.77 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.24 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 423 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKNPEKPLLL FLILASSLAS MATAKSTIEP CSSKDTCNSL LGYTLYTDLK VTEVASLFQV DPVSMLLSNS IDISYPDVEN HVLPAKLFLK IPITCSCVDG 101: IRKSLSTHYK TRTSDTLGSI ADSVYGGLVS PEQIQVANSE TDLSVLDVGT KLVIPLPCAC FNGTDESLPA LYLSYVVRGI DTMAGIAKRF STSVTDLTNV 201: NAMGAPDINP GDILAVPLLA CSSNFPKYAT DYGLIIPNGS YALTAGHCVQ CSCVLGSRSM YCEPASISVS CSSMRCRNSN FMLGNITSQQ SSSGCKLTTC 301: SYNGFASGTI LTTLSMSLQP RCPGPQQLAP LIAPPDNVPK ELMYLPSPSP SPSPEFDDIA GGGSSIAAVP AASPGGATVS SSNSIPGNPA NGPGGSISIA 401: SCPLSYYSFI ALLIPIGSCF FVF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)