AT2G34510.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function, DUF642 | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF642 (InterPro:IPR006946), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF642 (TAIR:AT1G29980.1); Has 305 Blast hits to 265 proteins in 22 species: Archae - 0; Bacteria - 13; Metazoa - 0; Fungi - 0; Plants - 292; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:14544114..14546732 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 43946.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.37 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.09 | ||||||||||||||||||||||||||||||||
| Length | 401 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMLYSNNSWR SNSILILLLG LSIVAAADSA GKTSPVEDGL VVNGDFETPP SNGFPDDAII EDTSEIPSWR SDGTVELIKS GQKQGGMILI VPEGRHAVRL 101: GNDAEISQEL TVEKGSIYSV TFSAARTCAQ LESLNVSVAS SDEPIASQTI DLQTVYSVQG WDPYAWAFEA VVDRVRLVFK NPGMEDDPTC GPIIDDIAVK 201: KLFTPDKPKG NAVINGDFEE GPWMFRNTTL GVLLPTNLDE EISSLPGWTV ESNRAVRFID SDHFSVPEGK RALELLSGKE GIISQMVETK ANIPYKMSFS 301: LGHAGDKCKE PLAVMAFAGD QAQNFHYMAQ ANSSFERSEL NFTAKAERTR IAFYSIYYNT RTDDMTSLCG PVIDDVKVWF SGSSRIGFSF PLFILLSLVF 401: I |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)