AT1G50040.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.992 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF1005) | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function (DUF1005); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: leaf apex, leaf whorl, root, petiole, leaf; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, LP.10 ten leaves visible, LP.08 eight leaves visible, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1005 (InterPro:IPR010410); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1005) (TAIR:AT3G19680.1); Has 143 Blast hits to 143 proteins in 17 species: Archae - 0; Bacteria - 4; Metazoa - 1; Fungi - 0; Plants - 137; Viruses - 1; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:18542236..18543823 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 49651.50 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 9.62 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.24 | ||||||||||||||||||||||||||||
| Length | 460 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDPCSFVRII VGNLAVRFPR SPSSSSSSSS SSGPSVSDVS SGNCYCKIKF KSFPRQIVSV PVLLRTESES ESRCCSGNVS TVAACFSLSK SQIETSLKKA 101: KWSVLSVEVY SRRSASCGFV AASGEKLIGR FQVTLDLKAA ESKTCLAHNG WVDLGTKSKN NKKSGSDPEL HVSVRVEPDT RFVFQFDGEP ECSPQVFQVQ 201: GNAKQAVFTC KFGFRNSGDR NLSLSLSSVT SGKEQFSKER KGWSITIHDL SGSPVAMASM VTPFVPSPGS NRVSRSSPGA WLILRPDGYT WKPWVRLQAW 301: REPGVSDVLG YRFELYKDGI AVAVSASSSI STKLGGSFII DGSTSTTTTA SWSSSEGSFD LSSWSSIRSS RTDSGSGSDF RFSLSQAQQN LGFVMSTRVQ 401: GVEKQSKPKV EVGVKHVTCT EDAAAHVALA AAVDLSMDAC RLFSQKLRNE LRQPSRVDIV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)