AT2G47440.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G62570.1); Has 357 Blast hits to 345 proteins in 102 species: Archae - 0; Bacteria - 6; Metazoa - 79; Fungi - 59; Plants - 180; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:19469912..19471660 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 58654.70 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.22 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.29 | ||||||||||||||||||||||||||||||||||||||||
| Length | 526 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAVYPNVNGD KKHWWFTHRK LVDKYIKDAT TLMASEEAND VASALHLLDA ALSISPRLET ALELKARSLL FLRRFKDVAD MLQDYIPSLK LDDEGSASSQ 101: GSSSSDGINL LSDASSPGSF KCFSVSDLKK KVMAGICKKC DKEGQWRYVV LGQACCHLGL MEDAMVLLQT GKRLASAEFR RRSICWSDDS FLLLSESSSA 201: SSPPPESENF THLLAHIKLL LRRRAAAIAA LDAGLFSESI RHFSKIVDGR RPAPQGFLAE CYMHRAAAYR SAGRIAEAIA DCNKTLALEP SCIQALETRA 301: ALLETVRCFP DSLHDLEHLK LLYNTILRDR KLPGPVWKRH NVKYREIPGK LCVLTTKTQK LKQKIANGET GNVDYYGLIG VRRGCTRSEL DRAHLLLCLR 401: YKPDRASSFI ERCEFTDQND VDSVRDRAKM SSLLLYRLIQ KGYTAVTAII AEEQRKNAIA HAQKIEERKP VEKSGSIKRT GNAETKPVNS NAYQGVFCRD 501: LAAVGNLLTR AGFNHPIPVK YEALTC |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)