AT1G57680.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.997 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP031277 (InterPro:IPR016971); Has 70 Blast hits to 70 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:21362749..21363837 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 40881.70 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.39 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.56 | ||||||||||||||||||||||||||||||||||||
| Length | 362 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MPLTKLVPDA FGVVTICLVA LLVLLGLLCI AYSFYFQSHV RKQGYIQLGY FSGPWIIRIT FILFAIWWAV GEIFRLSLLR RHRRLLSGLD LRWQENVCKW 101: YIVSNLGFAE PCLFLTLMFL LRAPLKMESG ALSGKWNRDT AGYIILYCLP MLALQLAVVL SESRLNGGSG SYVKLPHDFT RTYSRVIIDH DEVALCTYPL 201: LSTILLGVFA AVLTAYLFWL GRQILKLVIN KRLQKRVYTL IFSVSSFLPL RIVMLCLSVL TAADKIIFEA LSFLAFLSLF CFCVVSICLL VYFPVSDSMA 301: LRGLRDTDDE DTAVTEERSG ALLLAPNSSQ TDEGLSLRGR RDSGSSTQER YVELSLFLEA EN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)