AT1G24170.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.998 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Nucleotide-diphospho-sugar transferases superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a protein with putative galacturonosyltransferase activity. | ||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
LGT9; FUNCTIONS IN: transferase activity, transferring hexosyl groups, polygalacturonate 4-alpha-galacturonosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: glucosyl transferase family 8 (TAIR:AT1G70090.2); Has 2080 Blast hits to 2070 proteins in 453 species: Archae - 0; Bacteria - 1044; Metazoa - 227; Fungi - 4; Plants - 722; Viruses - 0; Other Eukaryotes - 83 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:8557451..8558632 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 43991.50 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.08 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.12 | ||||||||||||||||||||||||||||||||
| Length | 393 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSSRFSLTVV CLIALLPFVV GIRLIPARIT SVGDGGGGGG NNGFSKLGPF MEAPEYRNGK ECVSSSVNRE NFVSSSSSSN DPSLVHIAMT LDSEYLRGSI 101: AAVHSVLRHA SCPENVFFHF IAAEFDSASP RVLSQLVRST FPSLNFKVYI FREDTVINLI SSSIRLALEN PLNYARNYLG DILDRSVERV IYLDSDVITV 201: DDITKLWNTV LTGSRVIGAP EYCHANFTQY FTSGFWSDPA LPGLISGQKP CYFNTGVMVM DLVRWREGNY REKLEQWMQL QKKMRIYDLG SLPPFLLVFA 301: GNVEAIDHRW NQHGLGGDNI RGSCRSLHPG PVSLLHWSGK GKPWVRLDEK RPCPLDHLWE PYDLYKHKIE RAKDQSLLGF ASLSELTDDS SFL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)