AT3G11700.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:extracellular 1.000 ASURE: extracellular What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : FASCICLIN-like arabinogalactan protein 18 precursor | ||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
FASCICLIN-like arabinogalactan protein 18 precursor (FLA18); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cyclopentenone, cell adhesion; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: FAS1 domain (InterPro:IPR000782); BEST Arabidopsis thaliana protein match is: FASCICLIN-like arabinogalactan protein 17 precursor (TAIR:AT5G06390.1); Has 488 Blast hits to 470 proteins in 128 species: Archae - 2; Bacteria - 195; Metazoa - 32; Fungi - 4; Plants - 192; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr3:+:3698992..3700971 | ||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 50795.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 7.22 | ||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.28 | ||||||||||||||||||||||||||||||||||||||||||||
Length | 462 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MDRCIYGCSV ITIFFSFFFL LNASALESGH HNITGSGQIN SNSVLVALLD SRYTELAELV EKALLLQTLE DAVGRHNITI FAPRNEALER DLDPDFKRFL 101: LQPGNLKSLQ TLLLSHIIPK RVGSNQWPEE NSGRVKHVTL GHDQVLHLSK LKGTNGKRLV NSAVITRPDD LTRPDGLIHG IERLLIPRSV QEDFNRRRNL 201: RSISAVLPEG APEIDPRTNR LKKSATAVSV PAGSPPVLPI ESAMAPGPSL APAPAPGPGG AHKHFNGDAQ VKDFIHTLLH YGGYNEMADI LVNLTSLATE 301: MGRLVSEGYV LTVLAPNDEA MGKLTTDQLS EPGAPEQIMY YHIIPEYQTE ESMYNSVRRF GKVKYETLRF PHKVGAKEAD GSVKFGSGDR SAYLFDPDIY 401: TDGRISVQGI DGVLFPEEKE EETVKKPTGP VKKVVQPRRG KLLEVACSML GAIGKDSYLS RC |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)