suba logo
AT1G22882.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Galactose-binding protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Galactose-binding protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Sad1/UNC-like, C-terminal (InterPro:IPR012919), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: Galactose-binding protein (TAIR:AT1G71360.1); Has 2190 Blast hits to 1928 proteins in 337 species: Archae - 60; Bacteria - 185; Metazoa - 803; Fungi - 277; Plants - 164; Viruses - 19; Other Eukaryotes - 682 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG41116S0eggNOG:KOG1396EMBL:CP002684EnsemblPlants:AT1G22882
EnsemblPlants:AT1G22882.1entrez:838894Gene3D:2.60.120.260GeneID:838894
GO:GO:0005635GO:GO:0005783GO:GO:0016021Gramene:AT1G22882.1
hmmpanther:PTHR12953hmmpanther:PTHR12953:SF1InParanoid:F4I316InterPro:IPR008979
InterPro:IPR012919iPTMnet:F4I316KEGG:ath:AT1G22882ncoils:Coil
OMA:KTEASMAPaxDb:F4I316Pfam:PF07738Pfscan:PS51469
PRIDE:F4I316PROSITE:PS51469ProteinModelPortal:F4I316Proteomes:UP000006548
RefSeq:NP_683323.2STRING:3702.AT1G22882.1SUPFAM:SSF49785TAIR:AT1G22882
TMHMM:TMhelixUniGene:At.45268UniProt:F4I316
Coordinates (TAIR10) chr1:+:8099150..8101220
Molecular Weight (calculated) 74188.40 Da
IEP (calculated) 4.83
GRAVY (calculated) -0.62
Length 660 amino acids
Sequence (TAIR10)
(BLAST)
001: MQRSCRTRRR VSVNKFNGRN SFYKVSLSLV FLLWVLLFFS TLLISHGDGA KDEPLNDSMG MADPDDGQSD EKVVPFDGPL SLASASVDVT SDLSRNDDVN
101: LSEESEDKEQ EAEISSTVSG NDIESKDTYL LKQSEINKKD TGIDAGSKYD DFPKKSEINN TGTWNDTEGK DDNNFLKQSQ LNKTGTGNDT ESSDNEFLEQ
201: NQMNKTVLGN GTEINVSKVD QPSRAVPLGL DEFKSRASNS RNKSLSDQVS GVIHRMEPGG KEYNYASASK GAKVLSSNKE AKGAASILSR DNDKYLRNPC
301: STEGKFVVVE LSEETLVNTI KIANFEHYSS NLKEFELQGT LVYPTDTWVH MGNFTASNVK HEQNFTLLEP KWVRYLKLNF ISHYGSEFYC TLSLIEVYGV
401: DAVERMLEDL ISVQDNKNAY KPREGDSEHK EKPMQQIESL EGDDGADKST HREKEKEAPP ENMLAKTEAS MAKSSNKLSE PVEEMRHHQP GSRMPGDTVL
501: KILMQKLRSL DLNLSILERY LEELNLRYGN IFKEMDREAG VREKAIVALR LDLEGMKERQ EGMVSEAEEM KEWRKRVEAE MEKAEKEKEN IRQSLEQVSK
601: RLEWMEKKCL TVFTVCLGFG IIAVIAVVIG MGTGLAEKTG SGAWLLLLIS STFIMFVLSL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)