AT4G23950.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.788 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Galactose-binding protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Galactose-binding protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Sad1/UNC-like, C-terminal (InterPro:IPR012919), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: Galactose-binding protein (TAIR:AT1G22882.1); Has 867 Blast hits to 815 proteins in 241 species: Archae - 25; Bacteria - 79; Metazoa - 272; Fungi - 148; Plants - 95; Viruses - 1; Other Eukaryotes - 247 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:12442297..12444330 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 63597.80 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.87 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.30 | ||||||||||||||||||||||||||||||||
| Length | 561 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MARRGSCSTI CLNEKLQRFR IVRISDKADN FNSRSGSFFE RSISLVLLLW CFLFLVYSKL GQSHDDYGNA DRIGNYTDGS VSKTLNSTSS VFPQATEKEN 101: NFCLLRKGQL QDVYEHVLVN NALLICKVVL PERRISKKTL EARDPRYVNL EDKSLKVNGS SQLVNNGTRY RLEPDGNGYN YASAMKGAKV VDHNKEAKGA 201: SNVLGKDHDK YLRNPCSVSD KYVVIELAEE TLVDTVRIAN FEHYSSNPKE FSLSGSLSFP SDMWTPAGSF AAANVKQIQS FRLPEPKWLR YLKLNLVSHY 301: GSEFYCTLSV VEVFGIDALE QMLEDLFVPS ETPPSKPAMV ELKTADEKQD GEIKSNRTDQ IGKETEAQKK KDDVVKTINI IGDKKYEVKE KHNVLKVMMQ 401: KVKLIEMNLS LLEDSVKKMN DKQPEVSLEM KKTLVLVEKS KADIREITEW KGKMEKELRD LELWKTLVAS RVESLARGNS ALRLDVEKIV KEQANLESKE 501: LGVLLISLFF VVLATIRLVS TRLWAFLGMS ITDKARSLWP DSGWVMILLS SSIMIFIHLL S |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)