AT2G33680.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.968 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT2G13600.1); Has 49646 Blast hits to 13771 proteins in 238 species: Archae - 0; Bacteria - 6; Metazoa - 50; Fungi - 74; Plants - 48928; Viruses - 0; Other Eukaryotes - 588 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:14249608..14251791 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 80313.60 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.50 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.02 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 727 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MHPSTFQTEL NPHTSTLLKK LTHHSQQRNL VAGRAVHGQI IRTGASTCIQ HANVLVNFYA KCGKLAKAHS IFNAIICKDV VSWNSLITGY SQNGGISSSY 101: TVMQLFREMR AQDILPNAYT LAGIFKAESS LQSSTVGRQA HALVVKMSSF GDIYVDTSLV GMYCKAGLVE DGLKVFAYMP ERNTYTWSTM VSGYATRGRV 201: EEAIKVFNLF LREKEEGSDS DYVFTAVLSS LAATIYVGLG RQIHCITIKN GLLGFVALSN ALVTMYSKCE SLNEACKMFD SSGDRNSITW SAMVTGYSQN 301: GESLEAVKLF SRMFSAGIKP SEYTIVGVLN ACSDICYLEE GKQLHSFLLK LGFERHLFAT TALVDMYAKA GCLADARKGF DCLQERDVAL WTSLISGYVQ 401: NSDNEEALIL YRRMKTAGII PNDPTMASVL KACSSLATLE LGKQVHGHTI KHGFGLEVPI GSALSTMYSK CGSLEDGNLV FRRTPNKDVV SWNAMISGLS 501: HNGQGDEALE LFEEMLAEGM EPDDVTFVNI ISACSHKGFV ERGWFYFNMM SDQIGLDPKV DHYACMVDLL SRAGQLKEAK EFIESANIDH GLCLWRILLS 601: ACKNHGKCEL GVYAGEKLMA LGSRESSTYV QLSGIYTALG RMRDVERVWK HMRANGVSKE VGCSWIELKN QYHVFVVGDT MHPMIEETKD LVCLVSRQMI 701: EEGFVTVLDS SFVEEEEGTQ LSTSFII |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)