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AT3G02330.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
FP Images

Arabidopsis cell culture (mitochondrial marker)

At3g02330-GFP (AA 1-100)mitochondrial marker-RFPoverlay

Images by Sandra Tanz

Arabidopsis cell culture (plastidal marker)

At3g02330-GFP (AA 1-100)plastidal marker-RFPoverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pentatricopeptide repeat (PPR) superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G39530.1); Has 56701 Blast hits to 14050 proteins in 283 species: Archae - 2; Bacteria - 22; Metazoa - 148; Fungi - 141; Plants - 55528; Viruses - 0; Other Eukaryotes - 860 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC009755EMBL:AC068900
EMBL:CP002686EnsemblPlants:AT3G02330EnsemblPlants:AT3G02330.1entrez:821115
Gene3D:1.25.40.10GeneID:821115Genevisible:Q9FWA6Gramene:AT3G02330.1
hmmpanther:PTHR24015hmmpanther:PTHR24015:SF52HOGENOM:HOG000084920InParanoid:Q9FWA6
InterPro:IPR002885InterPro:IPR011990iPTMnet:Q9FWA6KEGG:ath:AT3G02330
OMA:FRSCAAMPaxDb:Q9FWA6Pfam:PF01535Pfam:PF13041
Pfam:Q9FWA6Pfscan:PS51375PhylomeDB:Q9FWA6PRIDE:Q9FWA6
PRO:PR:Q9FWA6PROSITE:PS51375ProteinModelPortal:Q9FWA6Proteomes:UP000006548
RefSeq:NP_186882.2SMR:Q9FWA6STRING:3702.AT3G02330.1SUPFAM:SSF48452
TAIR:AT3G02330TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.53158
UniProt:Q9FWA6
Coordinates (TAIR10) chr3:-:473881..476592
Molecular Weight (calculated) 101720.00 Da
IEP (calculated) 6.37
GRAVY (calculated) -0.06
Length 903 amino acids
Sequence (TAIR10)
(BLAST)
001: MAESLRLLHM TRSVVSFNRC LTEKISYRRV PSFSYFTDFL NQVNSVSTTN FSFVFKECAK QGALELGKQA HAHMIISGFR PTTFVLNCLL QVYTNSRDFV
101: SASMVFDKMP LRDVVSWNKM INGYSKSNDM FKANSFFNMM PVRDVVSWNS MLSGYLQNGE SLKSIEVFVD MGREGIEFDG RTFAIILKVC SFLEDTSLGM
201: QIHGIVVRVG CDTDVVAASA LLDMYAKGKR FVESLRVFQG IPEKNSVSWS AIIAGCVQNN LLSLALKFFK EMQKVNAGVS QSIYASVLRS CAALSELRLG
301: GQLHAHALKS DFAADGIVRT ATLDMYAKCD NMQDAQILFD NSENLNRQSY NAMITGYSQE EHGFKALLLF HRLMSSGLGF DEISLSGVFR ACALVKGLSE
401: GLQIYGLAIK SSLSLDVCVA NAAIDMYGKC QALAEAFRVF DEMRRRDAVS WNAIIAAHEQ NGKGYETLFL FVSMLRSRIE PDEFTFGSIL KACTGGSLGY
501: GMEIHSSIVK SGMASNSSVG CSLIDMYSKC GMIEEAEKIH SRFFQRANVS GTMEELEKMH NKRLQEMCVS WNSIISGYVM KEQSEDAQML FTRMMEMGIT
601: PDKFTYATVL DTCANLASAG LGKQIHAQVI KKELQSDVYI CSTLVDMYSK CGDLHDSRLM FEKSLRRDFV TWNAMICGYA HHGKGEEAIQ LFERMILENI
701: KPNHVTFISI LRACAHMGLI DKGLEYFYMM KRDYGLDPQL PHYSNMVDIL GKSGKVKRAL ELIREMPFEA DDVIWRTLLG VCTIHRNNVE VAEEATAALL
801: RLDPQDSSAY TLLSNVYADA GMWEKVSDLR RNMRGFKLKK EPGCSWVELK DELHVFLVGD KAHPRWEEIY EELGLIYSEM KPFDDSSFVR GVEVEEEDQW
901: CYC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)