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AT3G13880.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G27610.1); Has 47940 Blast hits to 13892 proteins in 261 species: Archae - 0; Bacteria - 5; Metazoa - 141; Fungi - 107; Plants - 47020; Viruses - 0; Other Eukaryotes - 667 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AB028610EMBL:BX824350
EMBL:CP002686EnsemblPlants:AT3G13880EnsemblPlants:AT3G13880.1entrez:820601
Gene3D:1.25.40.10GeneID:820601Genevisible:Q9LRV9GO:GO:0005739
GO:GO:1900864Gramene:AT3G13880.1hmmpanther:PTHR24015hmmpanther:PTHR24015:SF398
HOGENOM:HOG000237570InParanoid:Q9LRV9InterPro:IPR002885InterPro:IPR011990
KEGG:ath:AT3G13880OMA:MYLDAGEPaxDb:Q9LRV9Pfam:PF01535
Pfam:PF13041Pfam:Q9LRV9Pfscan:PS51375PhylomeDB:Q9LRV9
PRIDE:Q9LRV9PRO:PR:Q9LRV9PROSITE:PS51375ProteinModelPortal:Q9LRV9
Proteomes:UP000006548RefSeq:NP_188004.1SMR:Q9LRV9STRING:3702.AT3G13880.1
TAIR:AT3G13880TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.50181
UniProt:Q9LRV9
Coordinates (TAIR10) chr3:+:4572180..4574426
Molecular Weight (calculated) 83198.40 Da
IEP (calculated) 6.07
GRAVY (calculated) 0.01
Length 748 amino acids
Sequence (TAIR10)
(BLAST)
001: MLLQFRAKTF FNNIAQDSLV TLITKRVGLG YRFLSSLCQP KNTALDSEGY KILFQTAAKS GSVVLGKLAH GHMIKSSLNP CLYLLNNLLN MYCKCRELGF
101: ARQLFDRMPE RNIISFNSLI SGYTQMGFYE QAMELFLEAR EANLKLDKFT YAGALGFCGE RCDLDLGELL HGLVVVNGLS QQVFLINVLI DMYSKCGKLD
201: QAMSLFDRCD ERDQVSWNSL ISGYVRVGAA EEPLNLLAKM HRDGLNLTTY ALGSVLKACC INLNEGFIEK GMAIHCYTAK LGMEFDIVVR TALLDMYAKN
301: GSLKEAIKLF SLMPSKNVVT YNAMISGFLQ MDEITDEASS EAFKLFMDMQ RRGLEPSPST FSVVLKACSA AKTLEYGRQI HALICKNNFQ SDEFIGSALI
401: ELYALMGSTE DGMQCFASTS KQDIASWTSM IDCHVQNEQL ESAFDLFRQL FSSHIRPEEY TVSLMMSACA DFAALSSGEQ IQGYAIKSGI DAFTSVKTSS
501: ISMYAKSGNM PLANQVFIEV QNPDVATYSA MISSLAQHGS ANEALNIFES MKTHGIKPNQ QAFLGVLIAC CHGGLVTQGL KYFQCMKNDY RINPNEKHFT
601: CLVDLLGRTG RLSDAENLIL SSGFQDHPVT WRALLSSCRV YKDSVIGKRV AERLMELEPE ASGSYVLLHN IYNDSGVNSS AEEVRELMRD RGVKKEPALS
701: WIVIGNQTHS FAVADLSHPS SQMIYTMLET MDNVDFVDYT LVHFCSVT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)