AT3G03580.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G18750.1); Has 54534 Blast hits to 14239 proteins in 270 species: Archae - 2; Bacteria - 13; Metazoa - 57; Fungi - 143; Plants - 53473; Viruses - 0; Other Eukaryotes - 846 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:860695..863343 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 99027.90 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.65 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.04 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 882 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MQTRVSSPFI SRALSSSSNL NELRRIHALV ISLGLDSSDF FSGKLIDKYS HFREPASSLS VFRRVSPAKN VYLWNSIIRA FSKNGLFPEA LEFYGKLRES 101: KVSPDKYTFP SVIKACAGLF DAEMGDLVYE QILDMGFESD LFVGNALVDM YSRMGLLTRA RQVFDEMPVR DLVSWNSLIS GYSSHGYYEE ALEIYHELKN 201: SWIVPDSFTV SSVLPAFGNL LVVKQGQGLH GFALKSGVNS VVVVNNGLVA MYLKFRRPTD ARRVFDEMDV RDSVSYNTMI CGYLKLEMVE ESVRMFLENL 301: DQFKPDLLTV SSVLRACGHL RDLSLAKYIY NYMLKAGFVL ESTVRNILID VYAKCGDMIT ARDVFNSMEC KDTVSWNSII SGYIQSGDLM EAMKLFKMMM 401: IMEEQADHIT YLMLISVSTR LADLKFGKGL HSNGIKSGIC IDLSVSNALI DMYAKCGEVG DSLKIFSSMG TGDTVTWNTV ISACVRFGDF ATGLQVTTQM 501: RKSEVVPDMA TFLVTLPMCA SLAAKRLGKE IHCCLLRFGY ESELQIGNAL IEMYSKCGCL ENSSRVFERM SRRDVVTWTG MIYAYGMYGE GEKALETFAD 601: MEKSGIVPDS VVFIAIIYAC SHSGLVDEGL ACFEKMKTHY KIDPMIEHYA CVVDLLSRSQ KISKAEEFIQ AMPIKPDASI WASVLRACRT SGDMETAERV 701: SRRIIELNPD DPGYSILASN AYAALRKWDK VSLIRKSLKD KHITKNPGYS WIEVGKNVHV FSSGDDSAPQ SEAIYKSLEI LYSLMAKEGY IPDPREVSQN 801: LEEEEEKRRL ICGHSERLAI AFGLLNTEPG TPLQVMKNLR VCGDCHEVTK LISKIVGREI LVRDANRFHL FKDGTCSCKD RW |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)