AT1G56690.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G09410.1); Has 51447 Blast hits to 14439 proteins in 253 species: Archae - 0; Bacteria - 17; Metazoa - 29; Fungi - 107; Plants - 50657; Viruses - 0; Other Eukaryotes - 637 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:21253817..21255931 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 79709.80 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.45 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.16 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 704 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKRLKLILRR TYLTSTGVNC SFEISRLSRI GKINEARKFF DSLQFKAIGS WNSIVSGYFS NGLPKEARQL FDEMSERNVV SWNGLVSGYI KNRMIVEARN 101: VFELMPERNV VSWTAMVKGY MQEGMVGEAE SLFWRMPERN EVSWTVMFGG LIDDGRIDKA RKLYDMMPVK DVVASTNMIG GLCREGRVDE ARLIFDEMRE 201: RNVVTWTTMI TGYRQNNRVD VARKLFEVMP EKTEVSWTSM LLGYTLSGRI EDAEEFFEVM PMKPVIACNA MIVGFGEVGE ISKARRVFDL MEDRDNATWR 301: GMIKAYERKG FELEALDLFA QMQKQGVRPS FPSLISILSV CATLASLQYG RQVHAHLVRC QFDDDVYVAS VLMTMYVKCG ELVKAKLVFD RFSSKDIIMW 401: NSIISGYASH GLGEEALKIF HEMPSSGTMP NKVTLIAILT ACSYAGKLEE GLEIFESMES KFCVTPTVEH YSCTVDMLGR AGQVDKAMEL IESMTIKPDA 501: TVWGALLGAC KTHSRLDLAE VAAKKLFENE PDNAGTYVLL SSINASRSKW GDVAVVRKNM RTNNVSKFPG CSWIEVGKKV HMFTRGGIKN HPEQAMILMM 601: LEKTDGLLRE AGYSPDCSHV LHDVDEEEKV DSLSRHSERL AVAYGLLKLP EGVPIRVMKN LRVCGDCHAA IKLISKVTER EIILRDANRF HHFNNGECSC 701: RDYW |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)