AT4G37170.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G22070.1); Has 43848 Blast hits to 14238 proteins in 253 species: Archae - 0; Bacteria - 12; Metazoa - 20; Fungi - 118; Plants - 43065; Viruses - 0; Other Eukaryotes - 633 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr4:-:17498580..17500655 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 78030.70 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 7.90 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.29 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 691 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MNHSNARKLT TLHGFILKRN LSSFHASLKR FSDKKFFNPN HEDGGVVVER LCRANRFGEA IDVLCGQKLL REAVQLLGRA KKPPASTYCN LIQVCSQTRA 101: LEEGKKVHEH IRTSGFVPGI VIWNRLLRMY AKCGSLVDAR KVFDEMPNRD LCSWNVMVNG YAEVGLLEEA RKLFDEMTEK DSYSWTAMVT GYVKKDQPEE 201: ALVLYSLMQR VPNSRPNIFT VSIAVAAAAA VKCIRRGKEI HGHIVRAGLD SDEVLWSSLM DMYGKCGCID EARNIFDKIV EKDVVSWTSM IDRYFKSSRW 301: REGFSLFSEL VGSCERPNEY TFAGVLNACA DLTTEELGKQ VHGYMTRVGF DPYSFASSSL VDMYTKCGNI ESAKHVVDGC PKPDLVSWTS LIGGCAQNGQ 401: PDEALKYFDL LLKSGTKPDH VTFVNVLSAC THAGLVEKGL EFFYSITEKH RLSHTSDHYT CLVDLLARSG RFEQLKSVIS EMPMKPSKFL WASVLGGCST 501: YGNIDLAEEA AQELFKIEPE NPVTYVTMAN IYAAAGKWEE EGKMRKRMQE IGVTKRPGSS WTEIKRKRHV FIAADTSHPM YNQIVEFLRE LRKKMKEEGY 601: VPATSLVLHD VEDEQKEENL VYHSEKLAVA FAILSTEEGT AIKVFKNLRS CVDCHGAIKF ISNITKRKIT VRDSTRFHCF ENGQCSCGDY W |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)