AT5G52850.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G13650.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:-:21414935..21417616 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 98845.30 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.97 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.01 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 893 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTSKVVAAAA SAFLSRTNEL GNLQKSCIRI LSFCESNSSR IGLHIHCPVI KFGLLENLDL CNNLLSLYLK TDGIWNARKL FDEMSHRTVF AWTVMISAFT 101: KSQEFASALS LFEEMMASGT HPNEFTFSSV VRSCAGLRDI SYGGRVHGSV IKTGFEGNSV VGSSLSDLYS KCGQFKEACE LFSSLQNADT ISWTMMISSL 201: VGARKWREAL QFYSEMVKAG VPPNEFTFVK LLGASSFLGL EFGKTIHSNI IVRGIPLNVV LKTSLVDFYS QFSKMEDAVR VLNSSGEQDV FLWTSVVSGF 301: VRNLRAKEAV GTFLEMRSLG LQPNNFTYSA ILSLCSAVRS LDFGKQIHSQ TIKVGFEDST DVGNALVDMY MKCSASEVEA SRVFGAMVSP NVVSWTTLIL 401: GLVDHGFVQD CFGLLMEMVK REVEPNVVTL SGVLRACSKL RHVRRVLEIH AYLLRRHVDG EMVVGNSLVD AYASSRKVDY AWNVIRSMKR RDNITYTSLV 501: TRFNELGKHE MALSVINYMY GDGIRMDQLS LPGFISASAN LGALETGKHL HCYSVKSGFS GAASVLNSLV DMYSKCGSLE DAKKVFEEIA TPDVVSWNGL 601: VSGLASNGFI SSALSAFEEM RMKETEPDSV TFLILLSACS NGRLTDLGLE YFQVMKKIYN IEPQVEHYVH LVGILGRAGR LEEATGVVET MHLKPNAMIF 701: KTLLRACRYR GNLSLGEDMA NKGLALAPSD PALYILLADL YDESGKPELA QKTRNLMTEK RLSKKLGKST VEVQGKVHSF VSEDVTRVDK TNGIYAEIES 801: IKEEIKRFGS PYRGNENASF HSAKQAVVYG FIYASPEAPV HVVKNKILCK DCHEFVSILT RLVDKKITVR DGNQVHIFKN GECSCKREET SFV |
||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)