AT2G29760.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plastid 1.000 ASURE: plastid What is SUBAcon? |
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Experimental Localisations and PPI |
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FP Images |
Arabidopsis cell culture (plastidal marker)
Arabidopsis cell culture (plastidal marker)
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
Encodes a chloroplast RNA editing factor. | ||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
ORGANELLE TRANSCRIPT PROCESSING 81 (OTP81); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G08070.1); Has 39055 Blast hits to 14294 proteins in 286 species: Archae - 1; Bacteria - 14; Metazoa - 160; Fungi - 158; Plants - 37962; Viruses - 2; Other Eukaryotes - 758 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr2:+:12712884..12715100 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 82790.60 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 6.83 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.16 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 738 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MAIFSTAQPL SLPRHPNFSN PNQPTTNNER SRHISLIERC VSLRQLKQTH GHMIRTGTFS DPYSASKLFA MAALSSFASL EYARKVFDEI PKPNSFAWNT 101: LIRAYASGPD PVLSIWAFLD MVSESQCYPN KYTFPFLIKA AAEVSSLSLG QSLHGMAVKS AVGSDVFVAN SLIHCYFSCG DLDSACKVFT TIKEKDVVSW 201: NSMINGFVQK GSPDKALELF KKMESEDVKA SHVTMVGVLS ACAKIRNLEF GRQVCSYIEE NRVNVNLTLA NAMLDMYTKC GSIEDAKRLF DAMEEKDNVT 301: WTTMLDGYAI SEDYEAAREV LNSMPQKDIV AWNALISAYE QNGKPNEALI VFHELQLQKN MKLNQITLVS TLSACAQVGA LELGRWIHSY IKKHGIRMNF 401: HVTSALIHMY SKCGDLEKSR EVFNSVEKRD VFVWSAMIGG LAMHGCGNEA VDMFYKMQEA NVKPNGVTFT NVFCACSHTG LVDEAESLFH QMESNYGIVP 501: EEKHYACIVD VLGRSGYLEK AVKFIEAMPI PPSTSVWGAL LGACKIHANL NLAEMACTRL LELEPRNDGA HVLLSNIYAK LGKWENVSEL RKHMRVTGLK 601: KEPGCSSIEI DGMIHEFLSG DNAHPMSEKV YGKLHEVMEK LKSNGYEPEI SQVLQIIEEE EMKEQSLNLH SEKLAICYGL ISTEAPKVIR VIKNLRVCGD 701: CHSVAKLISQ LYDREIIVRD RYRFHHFRNG QCSCNDFW |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)