AT5G62990.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Ubiquitin carboxyl-terminal hydrolase family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
embryo defective 1692 (emb1692); CONTAINS InterPro DOMAIN/s: RNA recognition domain, plant (InterPro:IPR021099); BEST Arabidopsis thaliana protein match is: Ubiquitin carboxyl-terminal hydrolase family protein (TAIR:AT4G01037.1); Has 538 Blast hits to 532 proteins in 58 species: Archae - 0; Bacteria - 4; Metazoa - 48; Fungi - 18; Plants - 406; Viruses - 7; Other Eukaryotes - 55 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:25277828..25279312 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 56791.20 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 7.79 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.46 | ||||||||||||||||||||||||||||
| Length | 494 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMMALTQLVP SSPEKLFCFS SFFLPSIPLE IRRSNVTTKT SSKKLGSLSL NISCSAHKIV RSPSLDRHVV KQNRVRFVQK LNTLLLSKPK HYIPIEILYK 101: CRSYLCIENP LAILSMIRRY PTIFELFTTP TPHLPMNATK PLSQLCVRLT SAASSLAMQE LNLKSEISDK LATKLQKLLM LSSHRRLLLS KLVHIAPDFG 201: FPPNFRSRLC NDYPDKFKTV DTSYGRALEL VSSDPELANQ MPSPEVDRGL IVDRPLKFKR LNLRRGLNLK RRHQGFLIKF RESPDVCPYK MSSDYLASES 301: IEAEKRACAV VREVLGLTVE KRTLIDHLTH FRKEFSLPNK LRDLIVRHPE LFYVSIKGMR DSVFLVEAYN DNGDLLDKDE RLVIRERLID LIQEGKRIRR 401: ERRRKGATLG DKSVEEKRKD DETIDDYDSD LDDEYEDGFE NLFDSEDLGV EYHFDEEDDD DEAGVNGESV EYWSRKLSSS GSSSDEANSA VESW |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)