AT4G39530.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G13650.1); Has 58623 Blast hits to 14407 proteins in 286 species: Archae - 2; Bacteria - 7; Metazoa - 151; Fungi - 177; Plants - 57378; Viruses - 0; Other Eukaryotes - 908 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:18374736..18377240 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 93799.70 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.24 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.01 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 834 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRSYRCWRKV QETIRLYSSS SSSASSLLEF VNADFPSTIG IRGRREFARL LQLRASDDLL HYQNVVHGQI IVWGLELDTY LSNILINLYS RAGGMVYARK 101: VFEKMPERNL VSWSTMVSAC NHHGIYEESL VVFLEFWRTR KDSPNEYILS SFIQACSGLD GRGRWMVFQL QSFLVKSGFD RDVYVGTLLI DFYLKDGNID 201: YARLVFDALP EKSTVTWTTM ISGCVKMGRS YVSLQLFYQL MEDNVVPDGY ILSTVLSACS ILPFLEGGKQ IHAHILRYGL EMDASLMNVL IDSYVKCGRV 301: IAAHKLFNGM PNKNIISWTT LLSGYKQNAL HKEAMELFTS MSKFGLKPDM YACSSILTSC ASLHALGFGT QVHAYTIKAN LGNDSYVTNS LIDMYAKCDC 401: LTDARKVFDI FAAADVVLFN AMIEGYSRLG TQWELHEALN IFRDMRFRLI RPSLLTFVSL LRASASLTSL GLSKQIHGLM FKYGLNLDIF AGSALIDVYS 501: NCYCLKDSRL VFDEMKVKDL VIWNSMFAGY VQQSENEEAL NLFLELQLSR ERPDEFTFAN MVTAAGNLAS VQLGQEFHCQ LLKRGLECNP YITNALLDMY 601: AKCGSPEDAH KAFDSAASRD VVCWNSVISS YANHGEGKKA LQMLEKMMSE GIEPNYITFV GVLSACSHAG LVEDGLKQFE LMLRFGIEPE TEHYVCMVSL 701: LGRAGRLNKA RELIEKMPTK PAAIVWRSLL SGCAKAGNVE LAEHAAEMAI LSDPKDSGSF TMLSNIYASK GMWTEAKKVR ERMKVEGVVK EPGRSWIGIN 801: KEVHIFLSKD KSHCKANQIY EVLDDLLVQI RGVS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)