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AT2G40720.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G21300.1); Has 52244 Blast hits to 13768 proteins in 266 species: Archae - 0; Bacteria - 9; Metazoa - 106; Fungi - 105; Plants - 51420; Viruses - 0; Other Eukaryotes - 604 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:CP002685EnsemblPlants:AT2G40720
EnsemblPlants:AT2G40720.1entrez:818667Gene3D:1.25.40.10GeneID:818667
Genevisible:Q7XJN6Gramene:AT2G40720.1hmmpanther:PTHR24015hmmpanther:PTHR24015:SF654
InParanoid:Q7XJN6InterPro:IPR002885InterPro:IPR011990iPTMnet:Q7XJN6
KEGG:ath:AT2G40720OMA:MEHYANMPaxDb:Q7XJN6Pfam:PF01535
Pfam:PF13041Pfam:Q7XJN6Pfscan:PS51375PhylomeDB:Q7XJN6
PIR:A84833PRIDE:Q7XJN6PRO:PR:Q7XJN6PROSITE:PS51375
ProteinModelPortal:Q7XJN6Proteomes:UP000006548RefSeq:NP_181604.1SMR:Q7XJN6
STRING:3702.AT2G40720.1TAIR:AT2G40720TIGRfam:TIGR00756TIGRFAMs:TIGR00756
UniGene:At.42919UniGene:At.42920UniProt:Q7XJN6
Coordinates (TAIR10) chr2:+:16987269..16989851
Molecular Weight (calculated) 95398.40 Da
IEP (calculated) 6.80
GRAVY (calculated) 0.07
Length 860 amino acids
Sequence (TAIR10)
(BLAST)
001: MRFKLHDVHI RRGLCCVADS YISPASINSG IRALIQKGEY LQALHLYSKH DGSSPFWTSV FTFPSLLKAC SALTNLSYGK TIHGSVVVLG WRYDPFIATS
101: LVNMYVKCGF LDYAVQVFDG WSQSQSGVSA RDVTVWNSMI DGYFKFRRFK EGVGCFRRML VFGVRPDAFS LSIVVSVMCK EGNFRREEGK QIHGFMLRNS
201: LDTDSFLKTA LIDMYFKFGL SIDAWRVFVE IEDKSNVVLW NVMIVGFGGS GICESSLDLY MLAKNNSVKL VSTSFTGALG ACSQSENSGF GRQIHCDVVK
301: MGLHNDPYVC TSLLSMYSKC GMVGEAETVF SCVVDKRLEI WNAMVAAYAE NDYGYSALDL FGFMRQKSVL PDSFTLSNVI SCCSVLGLYN YGKSVHAELF
401: KRPIQSTSTI ESALLTLYSK CGCDPDAYLV FKSMEEKDMV AWGSLISGLC KNGKFKEALK VFGDMKDDDD SLKPDSDIMT SVTNACAGLE ALRFGLQVHG
501: SMIKTGLVLN VFVGSSLIDL YSKCGLPEMA LKVFTSMSTE NMVAWNSMIS CYSRNNLPEL SIDLFNLMLS QGIFPDSVSI TSVLVAISST ASLLKGKSLH
601: GYTLRLGIPS DTHLKNALID MYVKCGFSKY AENIFKKMQH KSLITWNLMI YGYGSHGDCI TALSLFDEMK KAGESPDDVT FLSLISACNH SGFVEEGKNI
701: FEFMKQDYGI EPNMEHYANM VDLLGRAGLL EEAYSFIKAM PIEADSSIWL CLLSASRTHH NVELGILSAE KLLRMEPERG STYVQLINLY MEAGLKNEAA
801: KLLGLMKEKG LHKQPGCSWI EVSDRTNVFF SGGSSSPMKA EIFNVLNRLK SNMVDEDKAT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)