AT2G13600.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 ASURE: mitochondrion What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G22070.1); Has 46660 Blast hits to 13875 proteins in 226 species: Archae - 0; Bacteria - 4; Metazoa - 74; Fungi - 58; Plants - 45878; Viruses - 0; Other Eukaryotes - 646 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:5671493..5673586 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 78095.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.71 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.10 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 697 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MATKSFLKLA ADLSSFTDSS PFAKLLDSCI KSKLSAIYVR YVHASVIKSG FSNEIFIQNR LIDAYSKCGS LEDGRQVFDK MPQRNIYTWN SVVTGLTKLG 101: FLDEADSLFR SMPERDQCTW NSMVSGFAQH DRCEEALCYF AMMHKEGFVL NEYSFASVLS ACSGLNDMNK GVQVHSLIAK SPFLSDVYIG SALVDMYSKC 201: GNVNDAQRVF DEMGDRNVVS WNSLITCFEQ NGPAVEALDV FQMMLESRVE PDEVTLASVI SACASLSAIK VGQEVHGRVV KNDKLRNDII LSNAFVDMYA 301: KCSRIKEARF IFDSMPIRNV IAETSMISGY AMAASTKAAR LMFTKMAERN VVSWNALIAG YTQNGENEEA LSLFCLLKRE SVCPTHYSFA NILKACADLA 401: ELHLGMQAHV HVLKHGFKFQ SGEEDDIFVG NSLIDMYVKC GCVEEGYLVF RKMMERDCVS WNAMIIGFAQ NGYGNEALEL FREMLESGEK PDHITMIGVL 501: SACGHAGFVE EGRHYFSSMT RDFGVAPLRD HYTCMVDLLG RAGFLEEAKS MIEEMPMQPD SVIWGSLLAA CKVHRNITLG KYVAEKLLEV EPSNSGPYVL 601: LSNMYAELGK WEDVMNVRKS MRKEGVTKQP GCSWIKIQGH DHVFMVKDKS HPRKKQIHSL LDILIAEMRP EQDHTEIGSL SSEEMDYSSN LLWDNAM |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)